SMTL ID : 1wma.1

Crystal structure of human CBR1 in complex with Hydroxy-PP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.24 Å

Oligo State

monomer

Ligands

7 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: R.57, F.58 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:F.58 Water bridges: A:R.57 Salt bridges: A:R.57 SO4.2: 6 residues within 4Å: Chain A: F.102, S.190, S.191, A.192, Y.193 Ligands: PE5.11 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.192, A:Y.193 Water bridges: A:F.94, A:F.94 SO4.3: 4 residues within 4Å: Chain A: K.216, G.217, D.218, K.219 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.217, A:K.219 Water bridges: A:I.220 SO4.4: 3 residues within 4Å: Chain A: T.163, R.209, K.210 4 PLIP interactions: 4 interactions with chain A Water bridges: A:K.210, A:Q.214 Salt bridges: A:R.209, A:K.210 SO4.5: 2 residues within 4Å: Chain A: R.118, V.168 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.118, A:R.118, A:R.118 Salt bridges: A:R.118 SO4.6: 1 residues within 4Å: Chain A: R.272 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.272, A:R.272 Salt bridges: A:R.272 SO4.7: 3 residues within 4Å: Chain A: S.2, G.3, K.129 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.3 Water bridges: A:K.129, A:K.129 Salt bridges: A:K.129

2 x AB3: 3-(4-AMINO-1-TERT-BUTYL-1H-PYRAZOLO[3,4-D]PYRIMIDIN-3-YL)PHENOL(Non-covalent)

AB3.8: 11 residues within 4Å: Chain A: S.139, I.140, M.141, Y.193, C.226, G.228, W.229, M.234, A.235 Ligands: NDP.10, PE5.11 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:W.229, A:W.229, A:A.235 Hydrogen bonds: A:S.139, A:S.139, A:Y.193, A:G.228 Water bridges: A:W.229, A:W.229 pi-Stacking: A:W.229 AB3.9: 4 residues within 4Å: Chain A: R.22, R.26, L.27, E.244 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:R.26, A:L.27 Hydrogen bonds: A:R.22, A:R.22, A:E.244 Water bridges: A:D.23 pi-Cation interactions: A:R.26

1 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.10: 31 residues within 4Å: Chain A: G.11, G.12, N.13, K.14, G.15, I.16, R.37, L.61, D.62, I.63, D.64, N.89, A.90, G.91, I.92, T.112, V.137, S.138, S.139, Y.193, K.197, C.226, P.227, G.228, W.229, V.230, T.232, D.233, M.234, A.235 Ligands: AB3.8 33 PLIP interactions: 33 interactions with chain A Hydrophobic interactions: A:P.227 Hydrogen bonds: A:G.11, A:G.11, A:N.13, A:N.13, A:N.13, A:K.14, A:I.16, A:R.37, A:D.62, A:I.63, A:D.64, A:N.89, A:G.91, A:K.197, A:V.230, A:V.230, A:D.233, A:M.234 Water bridges: A:K.14, A:K.14, A:K.14, A:K.14, A:G.17, A:R.37, A:R.37, A:R.37, A:N.89, A:T.112 Salt bridges: A:K.14, A:K.14, A:R.37 pi-Cation interactions: A:R.37

1 x PE5: 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL(Non-covalent)

PE5.11: 10 residues within 4Å: Chain A: A.93, F.94, K.95, M.141, R.144, Y.193, W.229, M.234 Ligands: SO4.2, AB3.8 2 PLIP interactions: 2 interactions with chain A Water bridges: A:V.96, A:S.191

1 x P33: 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL(Non-covalent)

P33.12: 9 residues within 4Å: Chain A: C.121, T.122, L.125, P.126, H.207, K.210, L.211, Q.214, R.215 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tanaka, M. et al., An unbiased cell morphology-based screen for new, biologically active small molecules. Plos Biol. (2005)

Release Date

2005-04-26

Peptides

Carbonyl reductase [NADPH] 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Carbonyl reductase [NADPH] 1

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