SMTL ID : 3bhj.1

Crystal structure of human Carbonyl Reductase 1 in complex with glutathione

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.77 Å

Oligo State

monomer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: T.163, R.209, K.210 3 PLIP interactions: 3 interactions with chain A Water bridges: A:E.164, A:Q.214 Salt bridges: A:R.209 SO4.2: 4 residues within 4Å: Chain A: K.216, G.217, D.218, K.219 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.217, A:K.219, A:I.220 Water bridges: A:L.211, A:S.212, A:D.218 SO4.3: 2 residues within 4Å: Chain A: R.57, F.58 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:F.58 Water bridges: A:Q.43 Salt bridges: A:R.57 SO4.4: 3 residues within 4Å: Chain A: K.14, G.15, P.243 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.15 Water bridges: A:G.15 SO4.5: 3 residues within 4Å: Chain A: S.2, G.3, K.129 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.3 Water bridges: A:K.129 Salt bridges: A:K.129 SO4.6: 1 residues within 4Å: Chain A: R.41 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.41

2 x AB3: 3-(4-AMINO-1-TERT-BUTYL-1H-PYRAZOLO[3,4-D]PYRIMIDIN-3-YL)PHENOL(Non-covalent)

AB3.7: 11 residues within 4Å: Chain A: S.139, I.140, M.141, Y.193, C.226, G.228, W.229, M.234, A.235 Ligands: NAP.9, GSH.10 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:W.229, A:W.229, A:A.235 Hydrogen bonds: A:S.139, A:S.139, A:Y.193 pi-Stacking: A:W.229 AB3.8: 4 residues within 4Å: Chain A: R.22, R.26, L.27, E.244 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:R.26, A:L.27 Hydrogen bonds: A:R.22, A:R.22, A:E.244 Water bridges: A:D.23 pi-Cation interactions: A:R.26

1 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.9: 31 residues within 4Å: Chain A: G.11, G.12, N.13, K.14, G.15, I.16, R.37, L.61, D.62, I.63, D.64, N.89, A.90, G.91, I.92, T.112, V.137, S.138, S.139, Y.193, K.197, C.226, P.227, G.228, W.229, V.230, T.232, D.233, M.234, A.235 Ligands: AB3.7 33 PLIP interactions: 33 interactions with chain A Hydrophobic interactions: A:P.227 Hydrogen bonds: A:G.11, A:N.13, A:N.13, A:K.14, A:I.16, A:R.37, A:D.62, A:I.63, A:D.64, A:N.89, A:G.91, A:K.197, A:V.230, A:V.230, A:D.233, A:M.234 Water bridges: A:G.11, A:K.14, A:K.14, A:K.14, A:K.14, A:K.14, A:G.17, A:R.37, A:R.37, A:R.37, A:N.89, A:T.112 Salt bridges: A:K.14, A:K.14, A:R.37 pi-Cation interactions: A:R.37

1 x GSH: GLUTATHIONE(Non-covalent)

GSH.10: 12 residues within 4Å: Chain A: F.94, K.95, V.96, F.102, Q.105, S.190, S.191, A.192, Y.193, M.234, A.235 Ligands: AB3.7 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:F.94, A:V.96, A:Q.105, A:S.190, A:A.192, A:Y.193 Water bridges: A:A.97, A:Q.105, A:Q.105, A:T.109, A:A.235

2 x P33: 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL(Non-covalent)

P33.11: 5 residues within 4Å: Chain A: T.122, L.125, H.207, K.210, Q.214 No protein-ligand interaction detected (PLIP) P33.12: 3 residues within 4Å: Chain A: K.156, E.166, L.170 No protein-ligand interaction detected (PLIP)

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.13: 1 residues within 4Å: Chain A: Q.184 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.184

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bateman, R.L. et al., Human carbonyl reductase 1 is an s-nitrosoglutathione reductase. J.Biol.Chem. (2008)

Release Date

2008-10-21

Peptides

Carbonyl reductase [NADPH] 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Carbonyl reductase [NADPH] 1

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