SMTL ID : 3bhm.1

Crystal structure of human Carbonyl Reductase 1 in complex with S-hydroxymethylglutathione

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: R.57, F.58 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.58 Salt bridges: A:R.57 SO4.2: 3 residues within 4Å: Chain A: K.14, G.15, P.243 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.15 Water bridges: A:G.15 SO4.3: 2 residues within 4Å: Chain A: R.118, V.168 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.118 SO4.4: 4 residues within 4Å: Chain A: K.216, G.217, D.218, K.219 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.217, A:K.219 Water bridges: A:I.220

1 x AHE: 2-AMINO-4-[1-CARBOXYMETHYL-CARBAMOYL)-2-HYDROXYMETHYLSULFANYL-ETHYLCARBAMOYL]-BUTYRIC ACID(Non-covalent)

AHE.5: 13 residues within 4Å: Chain A: A.93, F.94, K.95, V.96, F.102, Q.105, M.141, S.190, S.191, A.192, Y.193, M.234 Ligands: AB3.6 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:F.94, A:V.96, A:A.192, A:Y.193 Water bridges: A:A.97, A:Q.105, A:T.109, A:A.235

2 x AB3: 3-(4-AMINO-1-TERT-BUTYL-1H-PYRAZOLO[3,4-D]PYRIMIDIN-3-YL)PHENOL(Non-covalent)

AB3.6: 10 residues within 4Å: Chain A: S.139, I.140, M.141, Y.193, G.228, W.229, M.234, A.235 Ligands: AHE.5, NAP.8 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:W.229, A:W.229, A:A.235 Hydrogen bonds: A:S.139, A:S.139, A:Y.193, A:G.228 pi-Stacking: A:W.229 AB3.7: 4 residues within 4Å: Chain A: R.22, R.26, L.27, E.244 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:R.26, A:L.27 Hydrogen bonds: A:R.22, A:R.22, A:E.244 Water bridges: A:D.23 pi-Cation interactions: A:R.26

1 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.8: 29 residues within 4Å: Chain A: G.11, N.13, K.14, G.15, I.16, R.37, L.61, D.62, I.63, D.64, N.89, A.90, G.91, I.92, T.112, V.137, S.138, S.139, Y.193, K.197, P.227, G.228, W.229, V.230, T.232, D.233, M.234, A.235 Ligands: AB3.6 33 PLIP interactions: 33 interactions with chain A Hydrophobic interactions: A:P.227 Hydrogen bonds: A:G.11, A:N.13, A:N.13, A:K.14, A:I.16, A:R.37, A:D.62, A:I.63, A:D.64, A:N.89, A:G.91, A:K.197, A:V.230, A:V.230, A:D.233, A:M.234 Water bridges: A:G.11, A:K.14, A:K.14, A:K.14, A:G.17, A:R.37, A:R.37, A:R.37, A:R.41, A:R.41, A:N.89, A:T.112 Salt bridges: A:K.14, A:K.14, A:R.37 pi-Cation interactions: A:R.37

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bateman, R.L. et al., Human carbonyl reductase 1 is an s-nitrosoglutathione reductase. J.Biol.Chem. (2008)

Release Date

2008-10-21

Peptides

Carbonyl reductase [NADPH] 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Carbonyl reductase [NADPH] 1

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