SMTL ID : 1yv2.1

Hepatitis C virus NS5B RNA-dependent RNA Polymerase genotype 2a

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

7 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: P.93, S.96, R.168, K.172 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.96 Water bridges: A:R.168, A:K.172, A:K.172 Salt bridges: A:R.168, A:K.172 SO4.2: 5 residues within 4Å: Chain A: P.94, H.95, G.104, A.105, K.106 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.106 Water bridges: A:R.98, A:A.105 Salt bridges: A:K.106 SO4.3: 3 residues within 4Å: Chain A: H.34, N.35, K.36 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.35, A:N.35 Salt bridges: A:K.20, A:H.34, A:K.36 SO4.4: 6 residues within 4Å: Chain A: W.6, A.9, L.10, S.46, A.49, K.50 4 PLIP interactions: 4 interactions with chain A Water bridges: A:A.9, A:I.11, A:I.11 Salt bridges: A:K.50 SO4.5: 3 residues within 4Å: Chain A: G.516, R.517, A.518 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.517, A:A.518 Salt bridges: A:R.517 SO4.6: 2 residues within 4Å: Chain A: Y.276, R.278 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.278 SO4.7: 4 residues within 4Å: Chain A: R.505, V.530, K.531, T.532 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.531, A:T.532, A:T.532 Salt bridges: A:R.505

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.8: 4 residues within 4Å: Chain A: T.7, G.8, A.9, Q.272 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.7, A:T.7, A:A.9 Water bridges: A:S.273

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Biswal, B.K. et al., Crystal Structures of the RNA-dependent RNA Polymerase Genotype 2a of Hepatitis C Virus Reveal Two Conformations and Suggest Mechanisms of Inhibition by Non-nucleoside Inhibitors. J.Biol.Chem. (2005)

Release Date

2005-03-22

Peptides

RNA dependent RNA polymerase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RNA dependent RNA polymerase

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