SMTL ID : 1yvx.1

Hepatitis C Virus RNA Polymerase Genotype 2a In Complex With Non- Nucleoside Analogue Inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

9 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: P.93, S.96, R.168, K.172 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.96 Water bridges: A:K.172, A:K.172, A:K.172, A:K.172 Salt bridges: A:R.168, A:K.172 SO4.2: 5 residues within 4Å: Chain A: P.94, H.95, G.104, A.105, K.106 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:P.94, A:A.105, A:K.106 Salt bridges: A:H.95, A:K.106 SO4.3: 3 residues within 4Å: Chain A: L.457, G.516, R.517 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.517 Water bridges: A:A.518 Salt bridges: A:R.517 SO4.4: 4 residues within 4Å: Chain A: R.505, V.530, K.531, T.532 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.531, A:T.532, A:T.532 Salt bridges: A:R.505 SO4.5: 5 residues within 4Å: Chain A: W.6, A.9, I.11, S.46, A.49 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.46 Water bridges: A:G.8, A:A.9 SO4.6: 3 residues within 4Å: Chain A: E.230, Y.276, R.278 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.230 Water bridges: A:E.230, A:R.278 Salt bridges: A:R.278 SO4.7: 2 residues within 4Å: Chain A: L.482 Ligands: IPC.10 No protein-ligand interaction detected (PLIP) SO4.8: 3 residues within 4Å: Chain A: H.34, N.35, K.36 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.35, A:N.35 Salt bridges: A:K.36 SO4.9: 4 residues within 4Å: Chain A: S.367, R.386, T.390, R.394 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.367 Water bridges: A:T.390, A:R.394, A:R.394 Salt bridges: A:R.386, A:R.394

1 x IPC: 3-[ISOPROPYL(4-METHYLBENZOYL)AMINO]-5-PHENYLTHIOPHENE-2-CARBOXYLIC ACID(Non-covalent)

IPC.10: 13 residues within 4Å: Chain A: I.419, R.422, M.423, L.474, H.475, T.476, Y.477, L.482, L.497, R.498, K.501, W.528 Ligands: SO4.7 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:R.422, A:H.475, A:Y.477, A:L.497, A:R.498, A:W.528, A:W.528, A:W.528 Hydrogen bonds: A:T.476, A:Y.477 Water bridges: A:K.533

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Biswal, B.K. et al., Crystal structures of the RNA dependent RNA polymerase genotype 2a of hepatitis C virus reveal two conformations and suggest mechanisms of inhibition by non-nucleoside inhibitors. J.Biol.Chem. (2005)

Release Date

2005-03-22

Peptides

RNA dependent RNA polymerase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RNA dependent RNA polymerase

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