SMTL ID : 1yvf.1 (1 other biounit)

Hepatitis C virus NS5B RNA-dependent RNA polymerase complex with inhibitor PHA-00729145

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 4 residues within 4Å: Chain A: N.370, G.481, E.482, R.485 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.370, A:G.481 Water bridges: A:S.372, A:R.485 Salt bridges: A:R.485

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 2 residues within 4Å: Chain A: P.480, G.481 Ligand excluded by PLIP

1 x PH7: (2Z)-2-(BENZOYLAMINO)-3-[4-(2-BROMOPHENOXY)PHENYL]-2-PROPENOIC ACID(Non-covalent)

PH7.3: 17 residues within 4Å: Chain A: F.194, P.198, R.201, N.317, C.367, S.369, L.385, G.411, N.412, M.415, Y.416, Q.447, I.448, Y.449, G.450, S.557 Ligands: GOL.6 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:P.198, A:L.385, A:L.385, A:Y.416, A:Y.449 Hydrogen bonds: A:Y.449, A:G.450 pi-Stacking: A:Y.449 Halogen bonds: A:Y.449

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 2 residues within 4Å: Chain A: F.163, R.169 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.169 GOL.5: 8 residues within 4Å: Chain A: L.83, L.84, S.85, V.86, R.121, W.124, M.174, E.249 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.86, A:R.121 GOL.6: 4 residues within 4Å: Chain A: D.320, C.367, S.368 Ligands: PH7.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.320 Water bridges: A:R.387 GOL.7: 3 residues within 4Å: Chain A: I.483, L.498, R.502 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pfefferkorn, J.A. et al., Inhibitors of HCV NS5B polymerase. Part 1: Evaluation of the southern region of (2Z)-2-(benzoylamino)-3-(5-phenyl-2-furyl)acrylic acid. Bioorg.Med.Chem.Lett. (2005)

Release Date

2005-04-19

Peptides

HCV NS5B POLYMERASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

HCV NS5B POLYMERASE

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