SMTL ID : 1z4u.1 (1 other biounit)

hepatitis C virus NS5B RNA-dependent RNA polymerase complex with inhibitor PHA-00799585

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 3 residues within 4Å: Chain A: S.479, P.480, G.481 Ligand excluded by PLIP

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 4 residues within 4Å: Chain A: L.363, G.481, E.482, R.485 5 PLIP interactions: 5 interactions with chain A Water bridges: A:N.370, A:R.485, A:R.485, A:R.485 Salt bridges: A:R.485

1 x PH9: (2Z)-2-[(1-ADAMANTYLCARBONYL)AMINO]-3-[4-(2-BROMOPHENOXY)PHENYL]PROP-2-ENOIC ACID(Non-covalent)

PH9.3: 18 residues within 4Å: Chain A: F.194, Y.196, P.198, R.201, N.317, C.367, S.369, L.385, G.411, N.412, M.415, Y.416, Q.447, I.448, Y.449, G.450, S.557 Ligands: GOL.4 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:F.194, A:P.198, A:L.385, A:Y.416, A:Y.449, A:Y.449 Hydrogen bonds: A:Y.449, A:S.557 Water bridges: A:G.450, A:G.450 Halogen bonds: A:Y.196, A:Y.449

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 4 residues within 4Å: Chain A: D.320, C.367, S.368 Ligands: PH9.3 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.320, A:S.368 Water bridges: A:R.387 GOL.5: 3 residues within 4Å: Chain A: C.214, T.330, Y.359 1 PLIP interactions: 1 interactions with chain A Water bridges: A:S.327 GOL.6: 3 residues within 4Å: Chain A: L.420, I.483, L.498 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pfefferkorn, J.A. et al., Inhibitors of HCV NS5B polymerase. Part 2: Evaluation of the northern region of (2Z)-2-benzoylamino-3-(4-phenoxy-phenyl)-acrylic acid. Bioorg.Med.Chem.Lett. (2005)

Release Date

2005-06-07

Peptides

HCV NS5B POLYMERASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

HCV NS5B POLYMERASE

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