SMTL ID : 1z2w.1 (2 other biounits)

Crystal structure of mouse Vps29 complexed with Mn2+

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 6 residues within 4Å: Chain A: D.18, H.20, N.49, H.125, H.127 Ligands: MN.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.18, A:H.20, A:H.127, H2O.1 MN.2: 5 residues within 4Å: Chain A: N.49, D.72, H.96, H.125 Ligands: MN.1 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.72, A:H.96, A:H.125, H2O.1, H2O.4

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain A: K.91, D.117, V.118, D.119, K.137, K.191 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.137, A:K.137, A:K.191 Water bridges: A:K.91, A:K.91, A:D.117 GOL.4: 3 residues within 4Å: Chain A: D.164, Y.173, Y.175 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.164, A:Y.175 GOL.5: 4 residues within 4Å: Chain A: F.129, E.130, A.131, F.132 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.131 Water bridges: A:F.129, A:F.129

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Collins, B.M. et al., Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer assembly. NAT.STRUCT.MOL.BIOL. (2005)

Release Date

2005-06-21

Peptides

Vacuolar protein sorting 29: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Vacuolar protein sorting 29

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