SMTL ID : 1z3i.1 (2 other biounits)

Structure of the SWI2/SNF2 chromatin remodeling domain of eukaryotic Rad54

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.579, C.584, C.587, H.611 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.579, A:C.584, A:C.587, A:H.611

9 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: Q.60, G.91, R.512, D.513 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.60, A:D.513 Salt bridges: A:R.512 SO4.3: 10 residues within 4Å: Chain A: G.89, L.90, G.91, K.92, T.93, C.481, G.482, Q.505, R.509, R.512 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:G.89, A:G.91, A:K.92, A:T.93, A:C.481, A:G.482, A:Q.505 Salt bridges: A:K.92, A:R.509, A:R.512 SO4.4: 4 residues within 4Å: Chain A: A.20, L.21, R.61, K.65 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.62 Salt bridges: A:R.61, A:K.65 SO4.5: 2 residues within 4Å: Chain A: R.297, T.299 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.297 SO4.6: 6 residues within 4Å: Chain A: P.122, S.123, S.177, Y.178, E.179, R.203 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.123, A:Y.178, A:E.179 Salt bridges: A:R.203 SO4.7: 2 residues within 4Å: Chain A: R.57, Y.306 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.57 SO4.8: 4 residues within 4Å: Chain A: T.603, C.604, D.605, N.608 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.605, A:N.608 SO4.9: 3 residues within 4Å: Chain A: Y.24, P.27, R.74 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.24 Salt bridges: A:R.74 SO4.10: 3 residues within 4Å: Chain A: G.194, Q.221, R.222 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.113 Salt bridges: A:R.222

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Thoma, N.H. et al., Structure of the SWI2/SNF2 chromatin-remodeling domain of eukaryotic Rad54. Nat.Struct.Mol.Biol. (2005)

Release Date

2005-04-05

Peptides

similar to RAD54-like: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
X

similar to RAD54-like

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