SMTL ID : 1z3i.2 (2 other biounits)

Structure of the SWI2/SNF2 chromatin remodeling domain of eukaryotic Rad54

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-hexamer

Ligands

6 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.579, C.584, C.587, H.611 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.579, A:C.584, A:C.587, A:H.611 ZN.11: 4 residues within 4Å: Chain B: H.579, C.584, C.587, H.611 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.579, B:C.584, B:C.587, B:H.611 ZN.21: 4 residues within 4Å: Chain C: H.579, C.584, C.587, H.611 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:H.579, C:C.584, C:C.587, C:H.611 ZN.31: 4 residues within 4Å: Chain D: H.579, C.584, C.587, H.611 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:H.579, D:C.584, D:C.587, D:H.611 ZN.41: 4 residues within 4Å: Chain E: H.579, C.584, C.587, H.611 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:H.579, E:C.584, E:C.587, E:H.611 ZN.51: 4 residues within 4Å: Chain F: H.579, C.584, C.587, H.611 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:H.579, F:C.584, F:C.587, F:H.611

54 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: Q.60, G.91, R.512, D.513 Ligand excluded by PLIP SO4.3: 10 residues within 4Å: Chain A: G.89, L.90, G.91, K.92, T.93, C.481, G.482, Q.505, R.509, R.512 Ligand excluded by PLIP SO4.4: 4 residues within 4Å: Chain A: A.20, L.21, R.61, K.65 Ligand excluded by PLIP SO4.5: 3 residues within 4Å: Chain A: R.297, T.299 Chain D: R.585 Ligand excluded by PLIP SO4.6: 6 residues within 4Å: Chain A: P.122, S.123, S.177, Y.178, E.179, R.203 Ligand excluded by PLIP SO4.7: 2 residues within 4Å: Chain A: R.57, Y.306 Ligand excluded by PLIP SO4.8: 4 residues within 4Å: Chain A: T.603, C.604, D.605, N.608 Ligand excluded by PLIP SO4.9: 3 residues within 4Å: Chain A: Y.24, P.27, R.74 Ligand excluded by PLIP SO4.10: 3 residues within 4Å: Chain A: G.194, Q.221, R.222 Ligand excluded by PLIP SO4.12: 4 residues within 4Å: Chain B: Q.60, G.91, R.512, D.513 Ligand excluded by PLIP SO4.13: 10 residues within 4Å: Chain B: G.89, L.90, G.91, K.92, T.93, C.481, G.482, Q.505, R.509, R.512 Ligand excluded by PLIP SO4.14: 4 residues within 4Å: Chain B: A.20, L.21, R.61, K.65 Ligand excluded by PLIP SO4.15: 3 residues within 4Å: Chain B: R.297, T.299 Chain F: R.585 Ligand excluded by PLIP SO4.16: 6 residues within 4Å: Chain B: P.122, S.123, S.177, Y.178, E.179, R.203 Ligand excluded by PLIP SO4.17: 2 residues within 4Å: Chain B: R.57, Y.306 Ligand excluded by PLIP SO4.18: 4 residues within 4Å: Chain B: T.603, C.604, D.605, N.608 Ligand excluded by PLIP SO4.19: 3 residues within 4Å: Chain B: Y.24, P.27, R.74 Ligand excluded by PLIP SO4.20: 3 residues within 4Å: Chain B: G.194, Q.221, R.222 Ligand excluded by PLIP SO4.22: 4 residues within 4Å: Chain C: Q.60, G.91, R.512, D.513 Ligand excluded by PLIP SO4.23: 10 residues within 4Å: Chain C: G.89, L.90, G.91, K.92, T.93, C.481, G.482, Q.505, R.509, R.512 Ligand excluded by PLIP SO4.24: 4 residues within 4Å: Chain C: A.20, L.21, R.61, K.65 Ligand excluded by PLIP SO4.25: 3 residues within 4Å: Chain C: R.297, T.299 Chain E: R.585 Ligand excluded by PLIP SO4.26: 6 residues within 4Å: Chain C: P.122, S.123, S.177, Y.178, E.179, R.203 Ligand excluded by PLIP SO4.27: 2 residues within 4Å: Chain C: R.57, Y.306 Ligand excluded by PLIP SO4.28: 4 residues within 4Å: Chain C: T.603, C.604, D.605, N.608 Ligand excluded by PLIP SO4.29: 3 residues within 4Å: Chain C: Y.24, P.27, R.74 Ligand excluded by PLIP SO4.30: 3 residues within 4Å: Chain C: G.194, Q.221, R.222 Ligand excluded by PLIP SO4.32: 4 residues within 4Å: Chain D: Q.60, G.91, R.512, D.513 Ligand excluded by PLIP SO4.33: 10 residues within 4Å: Chain D: G.89, L.90, G.91, K.92, T.93, C.481, G.482, Q.505, R.509, R.512 Ligand excluded by PLIP SO4.34: 4 residues within 4Å: Chain D: A.20, L.21, R.61, K.65 Ligand excluded by PLIP SO4.35: 3 residues within 4Å: Chain A: R.585 Chain D: R.297, T.299 Ligand excluded by PLIP SO4.36: 6 residues within 4Å: Chain D: P.122, S.123, S.177, Y.178, E.179, R.203 Ligand excluded by PLIP SO4.37: 2 residues within 4Å: Chain D: R.57, Y.306 Ligand excluded by PLIP SO4.38: 4 residues within 4Å: Chain D: T.603, C.604, D.605, N.608 Ligand excluded by PLIP SO4.39: 3 residues within 4Å: Chain D: Y.24, P.27, R.74 Ligand excluded by PLIP SO4.40: 3 residues within 4Å: Chain D: G.194, Q.221, R.222 Ligand excluded by PLIP SO4.42: 4 residues within 4Å: Chain E: Q.60, G.91, R.512, D.513 Ligand excluded by PLIP SO4.43: 10 residues within 4Å: Chain E: G.89, L.90, G.91, K.92, T.93, C.481, G.482, Q.505, R.509, R.512 Ligand excluded by PLIP SO4.44: 4 residues within 4Å: Chain E: A.20, L.21, R.61, K.65 Ligand excluded by PLIP SO4.45: 3 residues within 4Å: Chain C: R.585 Chain E: R.297, T.299 Ligand excluded by PLIP SO4.46: 6 residues within 4Å: Chain E: P.122, S.123, S.177, Y.178, E.179, R.203 Ligand excluded by PLIP SO4.47: 2 residues within 4Å: Chain E: R.57, Y.306 Ligand excluded by PLIP SO4.48: 4 residues within 4Å: Chain E: T.603, C.604, D.605, N.608 Ligand excluded by PLIP SO4.49: 3 residues within 4Å: Chain E: Y.24, P.27, R.74 Ligand excluded by PLIP SO4.50: 3 residues within 4Å: Chain E: G.194, Q.221, R.222 Ligand excluded by PLIP SO4.52: 4 residues within 4Å: Chain F: Q.60, G.91, R.512, D.513 Ligand excluded by PLIP SO4.53: 10 residues within 4Å: Chain F: G.89, L.90, G.91, K.92, T.93, C.481, G.482, Q.505, R.509, R.512 Ligand excluded by PLIP SO4.54: 4 residues within 4Å: Chain F: A.20, L.21, R.61, K.65 Ligand excluded by PLIP SO4.55: 3 residues within 4Å: Chain B: R.585 Chain F: R.297, T.299 Ligand excluded by PLIP SO4.56: 6 residues within 4Å: Chain F: P.122, S.123, S.177, Y.178, E.179, R.203 Ligand excluded by PLIP SO4.57: 2 residues within 4Å: Chain F: R.57, Y.306 Ligand excluded by PLIP SO4.58: 4 residues within 4Å: Chain F: T.603, C.604, D.605, N.608 Ligand excluded by PLIP SO4.59: 3 residues within 4Å: Chain F: Y.24, P.27, R.74 Ligand excluded by PLIP SO4.60: 3 residues within 4Å: Chain F: G.194, Q.221, R.222 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Thoma, N.H. et al., Structure of the SWI2/SNF2 chromatin-remodeling domain of eukaryotic Rad54. Nat.Struct.Mol.Biol. (2005)

Release Date

2005-04-05

Peptides

similar to RAD54-like: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
X

B
X

C
X

D
X

E
X

F
X

similar to RAD54-like

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