SMTL ID : 1z6f.1

Crystal structure of penicillin-binding protein 5 from E. coli in complex with a boronic acid inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x BO9: N1-[(1R)-1-(DIHYDROXYBORYL)ETHYL]-N2-[(TERT-BUTOXYCARBONYL)-D-GAMMA-GLUTAMYL]-N6-[(BENZYLOXY)CARBONYL-L-LYSINAMIDE(Covalent)

BO9.1: 19 residues within 4Å: Chain A: A.43, S.44, K.47, P.81, K.84, G.85, S.86, S.87, L.88, F.90, S.110, N.112, H.151, G.152, L.153, R.198, G.215, H.216, T.217 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:K.84, A:F.90, A:L.153, A:T.217 Hydrogen bonds: A:S.44, A:G.85, A:G.85, A:S.87, A:S.87, A:N.112, A:R.198, A:H.216, A:H.216, A:H.216 Water bridges: A:G.85, A:S.110, A:S.110, A:H.216 pi-Cation interactions: A:K.84

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: N.134, V.137, N.138, T.145, H.146 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.134, A:N.138, A:N.138, A:H.146

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nicola, G. et al., Crystal Structure of Escherichia coli Penicillin-Binding Protein 5 Bound to a Tripeptide Boronic Acid Inhibitor: A Role for Ser-110 in Deacylation. Biochemistry (2005)

Release Date

2005-06-21

Peptides

Penicillin-binding protein 5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Penicillin-binding protein 5

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