SMTL ID : 1za4.1

Crystal Structure of the Thrombospondin-1 N-terminal Domain in Complex with Arixtra

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x SGN: 2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose(Non-functional Binders)

SGN.1: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 6 residues within 4Å: Chain A: R.46, R.81, Q.82, M.83, G.137, G.196 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.197 Salt bridges: A:R.46 SO4.3: 1 residues within 4Å: Chain A: R.46 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.46 SO4.4: 5 residues within 4Å: Chain A: V.35, K.36, R.46, V.197 Ligands: SO4.5 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.36 Salt bridges: A:R.46, A:R.81 SO4.5: 2 residues within 4Å: Chain A: R.81 Ligands: SO4.4 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.81 SO4.6: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tan, K. et al., The Structures of the Thrombospondin-1 N-terminal Domain and its Complex with a Synthetic Pentameric Heparin. Structure (2006)

Release Date

2006-01-24

Peptides

Thrombospondin 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Thrombospondin 1

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