- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.36 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x ZN: ZINC ION(Non-covalent)
- 2 x SO4: SULFATE ION(Non-functional Binders)
SO4.2: 7 residues within 4Å:- Chain A: Q.130, A.135, S.136
- Chain E: Q.130, A.135, S.136
- Ligands: SO4.11
6 PLIP interactions:3 interactions with chain E, 3 interactions with chain A- Hydrogen bonds: E:Q.130, E:A.135, E:S.136, A:Q.130, A:A.135, A:S.136
SO4.11: 7 residues within 4Å:- Chain A: Q.130, A.135, S.136
- Chain E: Q.130, A.135, S.136
- Ligands: SO4.2
6 PLIP interactions:3 interactions with chain E, 3 interactions with chain A- Hydrogen bonds: E:Q.130, E:A.135, E:S.136, A:Q.130, A:A.135, A:S.136
- 8 x URD: 1-((2R,3R,4S,5R)-TETRAHYDRO-3,4-DIHYDROXY-5-(HYDROXYMETHYL)FURAN-2-YL)PYRIDINE-2,4(1H,3H)-DIONE(Non-covalent)
URD.3: 17 residues within 4Å:- Chain A: S.34, F.36, V.38, N.54, E.56, V.64, C.65, A.66, E.67, I.96, S.97, P.98
- Chain B: F.137
- Chain C: A.58, C.59, Y.60, P.61
8 PLIP interactions:5 interactions with chain A, 1 interactions with chain B, 2 interactions with chain C- Hydrophobic interactions: A:V.38
- Hydrogen bonds: A:N.54, A:E.56, A:A.66, C:A.58, C:Y.60
- Water bridges: A:C.99
- pi-Stacking: B:F.137
URD.5: 17 residues within 4Å:- Chain A: F.137
- Chain B: S.34, F.36, V.38, N.54, E.56, V.64, C.65, A.66, E.67, I.96, S.97, P.98
- Chain D: A.58, C.59, Y.60, P.61
9 PLIP interactions:2 interactions with chain D, 6 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: D:A.58, D:Y.60, B:N.54, B:E.56, B:A.66
- Hydrophobic interactions: B:V.38, B:I.96
- Water bridges: B:C.99
- pi-Stacking: A:F.137
URD.7: 17 residues within 4Å:- Chain A: A.58, C.59, Y.60, P.61
- Chain C: S.34, F.36, V.38, N.54, E.56, V.64, C.65, A.66, E.67, I.96, S.97, P.98
- Chain D: F.137
9 PLIP interactions:6 interactions with chain C, 1 interactions with chain D, 2 interactions with chain A- Hydrophobic interactions: C:V.38
- Hydrogen bonds: C:N.54, C:E.56, C:E.56, C:A.66, A:A.58, A:Y.60
- Water bridges: C:C.99
- pi-Stacking: D:F.137
URD.9: 17 residues within 4Å:- Chain B: A.58, C.59, Y.60, P.61
- Chain C: F.137
- Chain D: S.34, F.36, V.38, N.54, E.56, V.64, C.65, A.66, E.67, I.96, S.97, P.98
9 PLIP interactions:2 interactions with chain B, 6 interactions with chain D, 1 interactions with chain C- Hydrogen bonds: B:A.58, B:Y.60, D:N.54, D:E.56, D:E.56, D:A.66
- Hydrophobic interactions: D:V.38
- Water bridges: D:C.99
- pi-Stacking: C:F.137
URD.12: 17 residues within 4Å:- Chain E: S.34, F.36, V.38, N.54, E.56, V.64, C.65, A.66, E.67, I.96, S.97, P.98
- Chain F: F.137
- Chain G: A.58, C.59, Y.60, P.61
8 PLIP interactions:5 interactions with chain E, 1 interactions with chain F, 2 interactions with chain G- Hydrophobic interactions: E:V.38
- Hydrogen bonds: E:N.54, E:E.56, E:A.66, G:A.58, G:Y.60
- Water bridges: E:C.99
- pi-Stacking: F:F.137
URD.14: 17 residues within 4Å:- Chain E: F.137
- Chain F: S.34, F.36, V.38, N.54, E.56, V.64, C.65, A.66, E.67, I.96, S.97, P.98
- Chain H: A.58, C.59, Y.60, P.61
9 PLIP interactions:6 interactions with chain F, 2 interactions with chain H, 1 interactions with chain E- Hydrophobic interactions: F:V.38, F:I.96
- Hydrogen bonds: F:N.54, F:E.56, F:A.66, H:A.58, H:Y.60
- Water bridges: F:C.99
- pi-Stacking: E:F.137
URD.16: 17 residues within 4Å:- Chain E: A.58, C.59, Y.60, P.61
- Chain G: S.34, F.36, V.38, N.54, E.56, V.64, C.65, A.66, E.67, I.96, S.97, P.98
- Chain H: F.137
9 PLIP interactions:6 interactions with chain G, 1 interactions with chain H, 2 interactions with chain E- Hydrophobic interactions: G:V.38
- Hydrogen bonds: G:N.54, G:E.56, G:E.56, G:A.66, E:A.58, E:Y.60
- Water bridges: G:C.99
- pi-Stacking: H:F.137
URD.18: 17 residues within 4Å:- Chain F: A.58, C.59, Y.60, P.61
- Chain G: F.137
- Chain H: S.34, F.36, V.38, N.54, E.56, V.64, C.65, A.66, E.67, I.96, S.97, P.98
9 PLIP interactions:6 interactions with chain H, 1 interactions with chain G, 2 interactions with chain F- Hydrophobic interactions: H:V.38
- Hydrogen bonds: H:N.54, H:E.56, H:E.56, H:A.66, F:A.58, F:Y.60
- Water bridges: H:C.99
- pi-Stacking: G:F.137
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Teh, A.H. et al., The 1.48 A Resolution Crystal Structure of the Homotetrameric Cytidine Deaminase from Mouse. Biochemistry (2006)
- Release Date
- 2006-04-11
- Peptides
- Cytidine deaminase: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
AF
BG
CH
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.36 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x ZN: ZINC ION(Non-covalent)
- 2 x SO4: SULFATE ION(Non-functional Binders)
- 8 x URD: 1-((2R,3R,4S,5R)-TETRAHYDRO-3,4-DIHYDROXY-5-(HYDROXYMETHYL)FURAN-2-YL)PYRIDINE-2,4(1H,3H)-DIONE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Teh, A.H. et al., The 1.48 A Resolution Crystal Structure of the Homotetrameric Cytidine Deaminase from Mouse. Biochemistry (2006)
- Release Date
- 2006-04-11
- Peptides
- Cytidine deaminase: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
AF
BG
CH
D