- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.48 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x ZN: ZINC ION(Non-covalent)
- 2 x SO4: SULFATE ION(Non-functional Binders)
SO4.2: 7 residues within 4Å:- Chain A: Q.130, P.134, A.135
- Chain E: Q.130, A.135, S.136
- Ligands: SO4.11
6 PLIP interactions:3 interactions with chain A, 3 interactions with chain E- Hydrogen bonds: A:Q.130, A:A.135, E:Q.130, E:A.135, E:S.136
- Water bridges: A:S.136
SO4.11: 7 residues within 4Å:- Chain A: Q.130, A.135, S.136
- Chain E: Q.130, P.134, A.135
- Ligands: SO4.2
6 PLIP interactions:3 interactions with chain A, 3 interactions with chain E- Hydrogen bonds: A:Q.130, A:A.135, A:S.136, E:Q.130, E:A.135
- Water bridges: E:S.136
- 8 x TYU: TETRAHYDROURIDINE(Non-covalent)
TYU.3: 18 residues within 4Å:- Chain A: S.34, F.36, V.38, N.54, E.56, V.64, C.65, A.66, E.67, P.98, C.99, C.102
- Chain B: F.137
- Chain C: A.58, C.59, Y.60, P.61
- Ligands: ZN.1
8 PLIP interactions:5 interactions with chain A, 1 interactions with chain B, 2 interactions with chain C- Hydrogen bonds: A:N.54, A:E.56, A:A.66, A:E.67, A:C.99, C:A.58, C:Y.60
- Hydrophobic interactions: B:F.137
TYU.5: 18 residues within 4Å:- Chain A: F.137
- Chain B: S.34, F.36, V.38, N.54, E.56, V.64, C.65, A.66, E.67, P.98, C.99, C.102
- Chain D: A.58, C.59, Y.60, P.61
- Ligands: ZN.4
8 PLIP interactions:5 interactions with chain B, 2 interactions with chain D, 1 interactions with chain A- Hydrogen bonds: B:N.54, B:E.56, B:A.66, B:E.67, B:C.99, D:A.58, D:Y.60
- Hydrophobic interactions: A:F.137
TYU.7: 18 residues within 4Å:- Chain A: A.58, C.59, Y.60, P.61
- Chain C: S.34, F.36, V.38, N.54, E.56, V.64, C.65, A.66, E.67, P.98, C.99, C.102
- Chain D: F.137
- Ligands: ZN.6
9 PLIP interactions:6 interactions with chain C, 1 interactions with chain D, 2 interactions with chain A- Hydrogen bonds: C:N.54, C:E.56, C:E.56, C:A.66, C:E.67, C:C.99, A:A.58, A:Y.60
- Hydrophobic interactions: D:F.137
TYU.9: 18 residues within 4Å:- Chain B: A.58, C.59, Y.60, P.61
- Chain C: F.137
- Chain D: S.34, F.36, V.38, N.54, E.56, V.64, C.65, A.66, E.67, P.98, C.99, C.102
- Ligands: ZN.8
9 PLIP interactions:6 interactions with chain D, 2 interactions with chain B, 1 interactions with chain C- Hydrogen bonds: D:N.54, D:E.56, D:E.56, D:A.66, D:E.67, D:C.99, B:A.58, B:Y.60
- Hydrophobic interactions: C:F.137
TYU.12: 18 residues within 4Å:- Chain E: S.34, F.36, V.38, N.54, E.56, V.64, C.65, A.66, E.67, P.98, C.99, C.102
- Chain F: F.137
- Chain G: A.58, C.59, Y.60, P.61
- Ligands: ZN.10
8 PLIP interactions:5 interactions with chain E, 1 interactions with chain F, 2 interactions with chain G- Hydrogen bonds: E:N.54, E:E.56, E:A.66, E:E.67, E:C.99, G:A.58, G:Y.60
- Hydrophobic interactions: F:F.137
TYU.14: 18 residues within 4Å:- Chain E: F.137
- Chain F: S.34, F.36, V.38, N.54, E.56, V.64, C.65, A.66, E.67, P.98, C.99, C.102
- Chain H: A.58, C.59, Y.60, P.61
- Ligands: ZN.13
8 PLIP interactions:2 interactions with chain H, 5 interactions with chain F, 1 interactions with chain E- Hydrogen bonds: H:A.58, H:Y.60, F:N.54, F:E.56, F:A.66, F:E.67, F:C.99
- Hydrophobic interactions: E:F.137
TYU.16: 18 residues within 4Å:- Chain E: A.58, C.59, Y.60, P.61
- Chain G: S.34, F.36, V.38, N.54, E.56, V.64, C.65, A.66, E.67, P.98, C.99, C.102
- Chain H: F.137
- Ligands: ZN.15
10 PLIP interactions:2 interactions with chain E, 7 interactions with chain G, 1 interactions with chain H- Hydrogen bonds: E:A.58, E:Y.60, G:N.54, G:E.56, G:E.56, G:A.66, G:E.67, G:E.67, G:C.99
- Hydrophobic interactions: H:F.137
TYU.18: 18 residues within 4Å:- Chain F: A.58, C.59, Y.60, P.61
- Chain G: F.137
- Chain H: S.34, F.36, V.38, N.54, E.56, V.64, C.65, A.66, E.67, P.98, C.99, C.102
- Ligands: ZN.17
9 PLIP interactions:6 interactions with chain H, 2 interactions with chain F, 1 interactions with chain G- Hydrogen bonds: H:N.54, H:E.56, H:E.56, H:A.66, H:E.67, H:C.99, F:A.58, F:Y.60
- Hydrophobic interactions: G:F.137
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Teh, A.H. et al., The 1.48 A Resolution Crystal Structure of the Homotetrameric Cytidine Deaminase from Mouse. Biochemistry (2006)
- Release Date
- 2006-07-11
- Peptides
- Cytidine deaminase: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
AF
BG
CH
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.48 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x ZN: ZINC ION(Non-covalent)
- 2 x SO4: SULFATE ION(Non-functional Binders)
- 8 x TYU: TETRAHYDROURIDINE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Teh, A.H. et al., The 1.48 A Resolution Crystal Structure of the Homotetrameric Cytidine Deaminase from Mouse. Biochemistry (2006)
- Release Date
- 2006-07-11
- Peptides
- Cytidine deaminase: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
AF
BG
CH
D