- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.07 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x ZN: ZINC ION(Non-covalent)
- 2 x SO4: SULFATE ION(Non-functional Binders)
SO4.2: 7 residues within 4Å:- Chain A: Q.130, P.134, A.135
- Chain C: Q.130, A.135, S.136
- Ligands: SO4.8
7 PLIP interactions:4 interactions with chain A, 3 interactions with chain C- Hydrogen bonds: A:Q.130, A:A.135, C:Q.130, C:A.135, C:S.136
- Water bridges: A:S.136, A:S.136
SO4.8: 7 residues within 4Å:- Chain A: Q.130, A.135, S.136
- Chain C: Q.130, P.134, A.135
- Ligands: SO4.2
7 PLIP interactions:3 interactions with chain A, 4 interactions with chain C- Hydrogen bonds: A:Q.130, A:A.135, A:S.136, C:Q.130, C:A.135
- Water bridges: C:S.136, C:S.136
- 6 x CTN: 4-AMINO-1-BETA-D-RIBOFURANOSYL-2(1H)-PYRIMIDINONE(Non-covalent)
CTN.3: 12 residues within 4Å:- Chain A: S.34, F.36, V.38, N.54, E.56, V.64, C.65, A.66, E.67, I.96, S.97
- Chain B: F.137
7 PLIP interactions:6 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:N.54, A:E.56, A:A.66, A:E.67, A:S.97
- Water bridges: A:C.99
- pi-Stacking: B:F.137
CTN.9: 12 residues within 4Å:- Chain C: S.34, F.36, V.38, N.54, E.56, V.64, C.65, A.66, E.67, I.96, S.97
- Chain D: F.137
7 PLIP interactions:1 interactions with chain D, 6 interactions with chain C- pi-Stacking: D:F.137
- Hydrogen bonds: C:N.54, C:E.56, C:A.66, C:E.67, C:S.97
- Water bridges: C:C.99
CTN.14: 12 residues within 4Å:- Chain E: S.34, F.36, V.38, N.54, E.56, V.64, C.65, A.66, E.67, I.96, S.97
- Chain F: F.137
7 PLIP interactions:6 interactions with chain E, 1 interactions with chain F- Hydrogen bonds: E:N.54, E:E.56, E:A.66, E:E.67, E:S.97
- Water bridges: E:C.99
- pi-Stacking: F:F.137
CTN.16: 12 residues within 4Å:- Chain E: F.137
- Chain F: S.34, F.36, V.38, N.54, E.56, V.64, C.65, A.66, E.67, I.96, S.97
7 PLIP interactions:6 interactions with chain F, 1 interactions with chain E- Hydrogen bonds: F:N.54, F:E.56, F:A.66, F:E.67, F:S.97
- Water bridges: F:C.99
- pi-Stacking: E:F.137
CTN.18: 12 residues within 4Å:- Chain G: S.34, F.36, V.38, N.54, E.56, V.64, C.65, A.66, E.67, I.96, S.97
- Chain H: F.137
7 PLIP interactions:6 interactions with chain G, 1 interactions with chain H- Hydrogen bonds: G:N.54, G:E.56, G:A.66, G:E.67, G:S.97
- Water bridges: G:C.99
- pi-Stacking: H:F.137
CTN.20: 12 residues within 4Å:- Chain G: F.137
- Chain H: S.34, F.36, V.38, N.54, E.56, V.64, C.65, A.66, E.67, I.96, S.97
7 PLIP interactions:6 interactions with chain H, 1 interactions with chain G- Hydrogen bonds: H:N.54, H:E.56, H:A.66, H:E.67, H:S.97
- Water bridges: H:C.99
- pi-Stacking: G:F.137
- 2 x URI: URIDINE(Non-covalent)
URI.5: 16 residues within 4Å:- Chain A: F.137, L.142
- Chain B: S.34, F.36, V.38, N.54, E.56, V.64, C.65, A.66, E.67, P.98, C.99, C.102
- Ligands: ZN.4, NH3.6
5 PLIP interactions:1 interactions with chain A, 4 interactions with chain B- Hydrophobic interactions: A:F.137
- Hydrogen bonds: B:N.54, B:A.66, B:E.67, B:C.99
URI.11: 16 residues within 4Å:- Chain C: F.137, L.142
- Chain D: S.34, F.36, V.38, N.54, E.56, V.64, C.65, A.66, E.67, P.98, C.99, C.102
- Ligands: ZN.10, NH3.12
5 PLIP interactions:4 interactions with chain D, 1 interactions with chain C- Hydrogen bonds: D:N.54, D:A.66, D:E.67, D:C.99
- Hydrophobic interactions: C:F.137
- 2 x NH3: AMMONIA(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Teh, A.H. et al., The 1.48 A Resolution Crystal Structure of the Homotetrameric Cytidine Deaminase from Mouse. Biochemistry (2006)
- Release Date
- 2006-07-11
- Peptides
- Cytidine deaminase: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
CF
DG
CH
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.07 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x ZN: ZINC ION(Non-covalent)
- 2 x SO4: SULFATE ION(Non-functional Binders)
- 6 x CTN: 4-AMINO-1-BETA-D-RIBOFURANOSYL-2(1H)-PYRIMIDINONE(Non-covalent)
- 2 x URI: URIDINE(Non-covalent)
- 2 x NH3: AMMONIA(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Teh, A.H. et al., The 1.48 A Resolution Crystal Structure of the Homotetrameric Cytidine Deaminase from Mouse. Biochemistry (2006)
- Release Date
- 2006-07-11
- Peptides
- Cytidine deaminase: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
CF
DG
CH
D