SMTL ID : 1zc9.1

The crystal structure of dialkylglycine decarboxylase complex with pyridoxamine 5-phosphate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x K: POTASSIUM ION(Non-covalent)

K.1: 5 residues within 4Å: Chain A: L.78, S.80, T.303, V.305, D.307 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:L.78, A:S.80, A:T.303, A:D.307, H2O.1

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 4 residues within 4Å: Chain A: A.95, T.98, P.99, L.102 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.98, A:T.98, A:L.102, A:L.102

1 x PMP: 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE(Non-covalent)

PMP.3: 12 residues within 4Å: Chain A: T.110, G.111, A.112, N.115, W.138, H.139, G.140, E.210, D.243, A.245, Q.246, K.272 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:E.210, A:A.245 Hydrogen bonds: A:T.110, A:T.110, A:G.111, A:A.112, A:N.115, A:Q.246, A:K.272 Water bridges: A:Q.52, A:W.138, A:W.138, A:E.210, A:S.271, A:S.271, A:K.272, A:R.406

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fogle, E.J. et al., Role of q52 in catalysis of decarboxylation and transamination in dialkylglycine decarboxylase. Biochemistry (2005)

Release Date

2006-01-03

Peptides

2,2-dialkylglycine decarboxylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

2,2-dialkylglycine decarboxylase

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