SMTL ID : 1zd4.1

Human soluble epoxide hydrolase 4-(3-cyclohexyluriedo)-hexanoic acid complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: D.9, D.11, D.184, D.185 Ligands: PO4.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.9, A:D.11, A:D.185 MG.4: 5 residues within 4Å: Chain B: D.9, D.11, D.184, D.185 Ligands: PO4.5 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:D.9, B:D.11, B:D.185

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 7 residues within 4Å: Chain A: D.9, L.10, D.11, T.123, N.124, K.160 Ligands: MG.1 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:D.9, A:L.10, A:D.11, A:D.11, A:T.123, A:N.124, A:N.124 Salt bridges: A:K.160 PO4.5: 7 residues within 4Å: Chain B: D.9, L.10, D.11, T.123, N.124, K.160 Ligands: MG.4 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:D.9, B:L.10, B:D.11, B:D.11, B:N.124, B:N.124 Salt bridges: B:K.160

2 x NC6: 6-{[(CYCLOHEXYLAMINO)CARBONYL]AMINO}HEXANOIC ACID(Non-covalent)

NC6.3: 11 residues within 4Å: Chain A: F.267, D.335, W.336, M.339, Y.383, Q.384, M.419, Y.466, V.498, L.499, H.524 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:W.336, A:V.498, A:L.499 Hydrogen bonds: A:D.335, A:D.335 NC6.6: 11 residues within 4Å: Chain B: F.267, D.335, W.336, M.339, Y.383, Q.384, M.419, Y.466, V.498, L.499, H.524 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:W.336, B:V.498, B:L.499 Hydrogen bonds: B:D.335, B:D.335, B:Y.383, B:Y.466

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gomez, G.A. et al., Human soluble epoxide hydrolase: structural basis of inhibition by 4-(3-cyclohexylureido)-carboxylic acids. Protein Sci. (2006)

Release Date

2006-03-07

Peptides

epoxide hydrolase 2, cytoplasmic: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

epoxide hydrolase 2, cytoplasmic

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