- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x ZN: ZINC ION(Non-covalent)
- 8 x K: POTASSIUM ION(Non-covalent)
K.2: 5 residues within 4Å:- Chain A: D.178, D.180, H.182, S.201, L.202
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:D.178, A:D.180, A:H.182, A:S.201, A:L.202
K.3: 5 residues within 4Å:- Chain A: W.191, D.194, V.197, T.199, Y.226
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.194, A:V.197, A:Y.226, H2O.1, H2O.1
K.6: 5 residues within 4Å:- Chain B: D.178, D.180, H.182, S.201, L.202
5 PLIP interactions:5 interactions with chain B- Metal complexes: B:D.178, B:D.178, B:H.182, B:S.201, B:L.202
K.7: 5 residues within 4Å:- Chain B: W.191, D.194, V.197, T.199, Y.226
5 PLIP interactions:3 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:D.194, B:V.197, B:Y.226, H2O.13, H2O.14
K.10: 5 residues within 4Å:- Chain C: D.178, D.180, H.182, S.201, L.202
5 PLIP interactions:5 interactions with chain C- Metal complexes: C:D.178, C:D.180, C:H.182, C:S.201, C:L.202
K.11: 5 residues within 4Å:- Chain C: W.191, D.194, V.197, T.199, Y.226
5 PLIP interactions:3 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:D.194, C:V.197, C:Y.226, H2O.25, H2O.26
K.14: 5 residues within 4Å:- Chain D: W.191, D.194, V.197, T.199, Y.226
5 PLIP interactions:3 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: D:W.191, D:V.197, D:Y.226, H2O.38, H2O.38
K.15: 6 residues within 4Å:- Chain D: D.178, D.180, H.182, S.201, L.202, H.203
5 PLIP interactions:5 interactions with chain D- Metal complexes: D:D.178, D:D.178, D:H.182, D:S.201, D:L.202
- 4 x ACT: ACETATE ION(Non-functional Binders)
ACT.4: 11 residues within 4Å:- Chain A: P.140, H.142, H.143, G.151, C.153, D.180, H.182, D.268, G.310, Y.312
- Ligands: ZN.1
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:P.140
- Hydrogen bonds: A:Y.312
- Salt bridges: A:H.142, A:H.143, A:H.182
ACT.8: 11 residues within 4Å:- Chain B: P.140, H.142, H.143, G.151, C.153, D.180, H.182, D.268, G.310, Y.312
- Ligands: ZN.5
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:P.140
- Hydrogen bonds: B:Y.312
- Salt bridges: B:H.142, B:H.143, B:H.182
ACT.12: 11 residues within 4Å:- Chain C: P.140, H.142, H.143, G.151, C.153, D.180, H.182, D.268, G.310, Y.312
- Ligands: ZN.9
4 PLIP interactions:4 interactions with chain C- Hydrophobic interactions: C:P.140
- Salt bridges: C:H.142, C:H.143, C:H.182
ACT.16: 11 residues within 4Å:- Chain D: P.140, H.142, H.143, G.151, C.153, D.180, H.182, D.268, G.310, Y.312
- Ligands: ZN.13
5 PLIP interactions:5 interactions with chain D- Hydrophobic interactions: D:P.140
- Hydrogen bonds: D:Y.312
- Salt bridges: D:H.142, D:H.143, D:H.182
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nielsen, T.K. et al., Crystal structure of a bacterial class 2 histone deacetylase homologue. J.Mol.Biol. (2005)
- Release Date
- 2005-11-29
- Peptides
- Histone deacetylase-like amidohydrolase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x ZN: ZINC ION(Non-covalent)
- 8 x K: POTASSIUM ION(Non-covalent)
- 4 x ACT: ACETATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nielsen, T.K. et al., Crystal structure of a bacterial class 2 histone deacetylase homologue. J.Mol.Biol. (2005)
- Release Date
- 2005-11-29
- Peptides
- Histone deacetylase-like amidohydrolase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D