SMTL ID : 1zz3.1 (4 other biounits)

Crystal structure of a HDAC-like protein with CypX bound

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.76 Å

Oligo State

monomer

Ligands

1 x 3YP: 3-CYCLOPENTYL-N-HYDROXYPROPANAMIDE(Non-covalent)

3YP.1: 12 residues within 4Å: Chain A: L.21, H.142, H.143, G.151, F.152, D.180, H.182, F.208, D.268, G.310, Y.312 Ligands: ZN.2 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.21, A:F.152, A:F.152, A:F.208, A:F.208, A:F.208, A:F.208 Hydrogen bonds: A:H.143

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain A: H.142, D.180, H.182, D.268 Ligands: 3YP.1 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.180, A:D.180, A:H.182, A:D.268

2 x K: POTASSIUM ION(Non-covalent)

K.3: 5 residues within 4Å: Chain A: D.178, D.180, H.182, S.201, L.202 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.178, A:D.180, A:H.182, A:S.201, A:L.202 K.4: 5 residues within 4Å: Chain A: W.191, D.194, V.197, T.199, Y.226 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:W.191, A:D.194, A:V.197, A:Y.226, H2O.3

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nielsen, T.K. et al., Crystal structure of a bacterial class 2 histone deacetylase homologue. J.Mol.Biol. (2005)

Release Date

2005-11-29

Peptides

Histone deacetylase-like amidohydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Histone deacetylase-like amidohydrolase

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