- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.76 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x 3YP: 3-CYCLOPENTYL-N-HYDROXYPROPANAMIDE(Non-covalent)
- 4 x ZN: ZINC ION(Non-covalent)
ZN.2: 5 residues within 4Å:- Chain A: H.142, D.180, H.182, D.268
- Ligands: 3YP.1
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:D.180, A:D.180, A:H.182, A:D.268
ZN.6: 6 residues within 4Å:- Chain B: H.142, D.180, H.182, D.268, G.310
- Ligands: 3YP.5
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:D.180, B:D.180, B:H.182, B:D.268
ZN.10: 5 residues within 4Å:- Chain C: H.142, D.180, H.182, D.268
- Ligands: 3YP.9
4 PLIP interactions:4 interactions with chain C- Metal complexes: C:D.180, C:D.180, C:H.182, C:D.268
ZN.14: 4 residues within 4Å:- Chain D: D.180, H.182, D.268
- Ligands: 3YP.13
4 PLIP interactions:4 interactions with chain D- Metal complexes: D:D.180, D:D.180, D:H.182, D:D.268
- 8 x K: POTASSIUM ION(Non-covalent)
K.3: 5 residues within 4Å:- Chain A: D.178, D.180, H.182, S.201, L.202
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:D.178, A:D.180, A:H.182, A:S.201, A:L.202
K.4: 5 residues within 4Å:- Chain A: W.191, D.194, V.197, T.199, Y.226
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:W.191, A:D.194, A:V.197, A:Y.226, H2O.3
K.7: 6 residues within 4Å:- Chain B: D.178, D.180, H.182, G.184, S.201, L.202
5 PLIP interactions:5 interactions with chain B- Metal complexes: B:D.178, B:D.178, B:H.182, B:S.201, B:L.202
K.8: 5 residues within 4Å:- Chain B: W.191, D.194, V.197, T.199, Y.226
5 PLIP interactions:3 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:D.194, B:V.197, B:Y.226, H2O.14, H2O.14
K.11: 5 residues within 4Å:- Chain C: D.178, D.180, H.182, S.201, L.202
5 PLIP interactions:5 interactions with chain C- Metal complexes: C:D.178, C:D.180, C:H.182, C:S.201, C:L.202
K.12: 5 residues within 4Å:- Chain C: W.191, D.194, V.197, T.199, Y.226
5 PLIP interactions:3 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:W.191, C:D.194, C:V.197, H2O.28, H2O.29
K.15: 5 residues within 4Å:- Chain D: D.178, D.180, H.182, S.201, L.202
5 PLIP interactions:5 interactions with chain D- Metal complexes: D:D.178, D:D.180, D:H.182, D:S.201, D:L.202
K.16: 5 residues within 4Å:- Chain D: W.191, D.194, V.197, T.199, Y.226
5 PLIP interactions:3 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: D:W.191, D:D.194, D:V.197, H2O.41, H2O.42
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nielsen, T.K. et al., Crystal structure of a bacterial class 2 histone deacetylase homologue. J.Mol.Biol. (2005)
- Release Date
- 2005-11-29
- Peptides
- Histone deacetylase-like amidohydrolase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
DC
BD
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.76 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x 3YP: 3-CYCLOPENTYL-N-HYDROXYPROPANAMIDE(Non-covalent)
- 4 x ZN: ZINC ION(Non-covalent)
- 8 x K: POTASSIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nielsen, T.K. et al., Crystal structure of a bacterial class 2 histone deacetylase homologue. J.Mol.Biol. (2005)
- Release Date
- 2005-11-29
- Peptides
- Histone deacetylase-like amidohydrolase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
DC
BD
C