SMTL ID : 2b4y.4 (3 other biounits)

Crystal Structure of Human Sirtuin homolog 5

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.135, C.138, C.176, C.181 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.135, A:C.138, A:C.176, A:C.181

1 x APR: ADENOSINE-5-DIPHOSPHORIBOSE(Non-covalent)

APR.2: 20 residues within 4Å: Chain A: G.27, A.28, G.29, A.32, E.33, T.38, F.39, Q.109, H.127, G.218, T.219, S.220, V.223, N.244, T.245, E.246, G.260, P.261, C.262 Ligands: EPE.3 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:A.28, A:G.29, A:E.33, A:E.33, A:F.39, A:Q.109, A:S.220, A:S.220, A:N.244, A:T.245, A:C.262 Water bridges: A:A.32, A:F.39, A:S.220, A:E.246, A:E.246

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.3: 12 residues within 4Å: Chain A: F.39, A.51, A.55, R.74, H.127, V.190, F.192, E.194, L.196, V.223, Y.224 Ligands: APR.2 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Y.71 Water bridges: A:R.74, A:R.74, A:N.195, A:L.196 Salt bridges: A:R.74

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Antoshenko, T. et al., Crystal Structure of Human Sirtuin homolog 5 in complex with NAD. To be Published

Release Date

2006-02-28

Peptides

NAD-dependent deacetylase sirtuin-5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

NAD-dependent deacetylase sirtuin-5

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