SMTL ID : 2nyr.1 (2 other biounits)

Crystal Structure of Human Sirtuin Homolog 5 in Complex with Suramin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.06 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.135, C.138, C.176, C.181 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.135, A:C.138, A:C.176, A:C.181 ZN.3: 4 residues within 4Å: Chain B: C.135, C.138, C.176, C.181 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.135, B:C.138, B:C.176, B:C.181

1 x SVR: 8,8'-[CARBONYLBIS[IMINO-3,1-PHENYLENECARBONYLIMINO(4-METHYL-3,1-PHENYLENE)CARBONYLIMINO]]BIS-1,3,5-NAPHTHALENETRISULFON IC ACID(Non-covalent)

SVR.2: 41 residues within 4Å: Chain A: A.28, P.37, T.38, F.39, R.40, A.51, A.55, F.70, Y.71, R.74, Q.109, N.110, I.111, F.192, N.195, L.196, L.201, Y.224, M.228 Chain B: A.28, F.39, R.40, A.51, A.55, Y.71, R.74, Q.109, I.111, H.127, V.189, V.190, W.191, F.192, G.193, E.194, N.195, L.201, V.222, V.223, Y.224, M.228 39 PLIP interactions: 18 interactions with chain A, 21 interactions with chain B Hydrophobic interactions: A:T.38, A:F.39, A:R.40, A:R.40, A:L.196, A:L.196, A:L.201, A:Y.224, A:Y.224, A:Y.224, A:M.228, B:A.55, B:F.192, B:N.195, B:L.201, B:Y.224, B:Y.224 Hydrogen bonds: A:P.37, A:F.39, A:F.39, B:F.39, B:R.40, B:Y.71, B:R.74, B:Q.109, B:G.193, B:E.194, B:N.195, B:Y.224, B:Y.224 Water bridges: A:I.111, A:Y.224, B:E.194, B:L.196 Salt bridges: A:R.74, A:R.74, B:R.40, B:R.74 pi-Stacking: B:H.127

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schuetz, A. et al., Structural basis of inhibition of the human NAD+-dependent deacetylase SIRT5 by suramin. Structure (2007)

Release Date

2006-12-19

Peptides

NAD-dependent deacetylase sirtuin-5: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

NAD-dependent deacetylase sirtuin-5

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