SMTL ID : 2b81.3 (3 other biounits)

Crystal Structure of the Luciferase-like Monooxygenase from Bacillus cereus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-tetramer

Ligands

39 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: S.149, H.150, E.151 Ligand excluded by PLIP SO4.2: 1 residues within 4Å: Chain A: K.277 Ligand excluded by PLIP SO4.3: 4 residues within 4Å: Chain A: N.12, H.13, F.14, N.17 Ligand excluded by PLIP SO4.4: 5 residues within 4Å: Chain A: G.201, F.202, S.203, Q.204, Y.220 Ligand excluded by PLIP SO4.5: 4 residues within 4Å: Chain A: T.152, G.154, E.155, R.158 Ligand excluded by PLIP SO4.6: 5 residues within 4Å: Chain A: Q.124 Chain B: T.42, M.43, Y.82 Ligands: MES.23 Ligand excluded by PLIP SO4.7: 4 residues within 4Å: Chain A: R.276, K.277, I.280, E.315 Ligand excluded by PLIP SO4.8: 5 residues within 4Å: Chain A: P.221, R.222, S.223, H.226 Ligands: GOL.16 Ligand excluded by PLIP SO4.9: 4 residues within 4Å: Chain A: S.223, P.224, V.225, I.285 Ligand excluded by PLIP SO4.10: 2 residues within 4Å: Chain A: Y.219, R.222 Ligand excluded by PLIP SO4.11: 4 residues within 4Å: Chain A: F.38, H.39 Chain C: F.73, G.74 Ligand excluded by PLIP SO4.12: 3 residues within 4Å: Chain A: H.150, E.151, R.153 Ligand excluded by PLIP SO4.17: 7 residues within 4Å: Chain B: D.138, T.200, G.201, F.202, S.203, Q.204, Y.220 Ligand excluded by PLIP SO4.18: 3 residues within 4Å: Chain B: R.222, S.223, H.226 Ligand excluded by PLIP SO4.19: 2 residues within 4Å: Chain B: P.261, R.276 Ligand excluded by PLIP SO4.20: 3 residues within 4Å: Chain B: S.149, H.150, E.151 Ligand excluded by PLIP SO4.21: 4 residues within 4Å: Chain B: T.152, G.154, E.155, R.158 Ligand excluded by PLIP SO4.22: 3 residues within 4Å: Chain B: Y.219, R.222, H.226 Ligand excluded by PLIP SO4.25: 4 residues within 4Å: Chain C: T.152, G.154, E.155, R.158 Ligand excluded by PLIP SO4.26: 2 residues within 4Å: Chain C: R.153, Q.204 Ligand excluded by PLIP SO4.27: 4 residues within 4Å: Chain C: R.140, S.149, H.150, E.151 Ligand excluded by PLIP SO4.28: 3 residues within 4Å: Chain C: K.170, F.172, S.174 Ligand excluded by PLIP SO4.29: 2 residues within 4Å: Chain C: P.261, R.276 Ligand excluded by PLIP SO4.30: 6 residues within 4Å: Chain C: P.41, T.42, I.81, Y.82 Chain D: Q.124 Ligands: MES.36 Ligand excluded by PLIP SO4.31: 3 residues within 4Å: Chain C: Y.219, R.222, H.226 Ligand excluded by PLIP SO4.32: 3 residues within 4Å: Chain C: R.158, W.209, H.213 Ligand excluded by PLIP SO4.33: 6 residues within 4Å: Chain C: T.200, G.201, F.202, S.203, Q.204, Y.220 Ligand excluded by PLIP SO4.34: 3 residues within 4Å: Chain C: R.222, S.223, H.226 Ligand excluded by PLIP SO4.35: 3 residues within 4Å: Chain C: G.229, A.230, Q.233 Ligand excluded by PLIP SO4.38: 6 residues within 4Å: Chain D: M.43, K.45, Q.46, V.47, Y.87, Y.90 Ligand excluded by PLIP SO4.39: 4 residues within 4Å: Chain D: R.140, S.149, H.150, E.151 Ligand excluded by PLIP SO4.40: 2 residues within 4Å: Chain D: R.276, K.277 Ligand excluded by PLIP SO4.41: 4 residues within 4Å: Chain D: N.171, N.186, L.187, K.190 Ligand excluded by PLIP SO4.42: 4 residues within 4Å: Chain D: N.12, H.13, F.14, N.17 Ligand excluded by PLIP SO4.43: 5 residues within 4Å: Chain D: R.64, D.75, H.254, R.269, F.299 Ligand excluded by PLIP SO4.44: 4 residues within 4Å: Chain D: G.201, F.202, S.203, Y.220 Ligand excluded by PLIP SO4.45: 6 residues within 4Å: Chain D: L.257, S.258, E.259, R.273, Q.302, R.303 Ligand excluded by PLIP SO4.46: 4 residues within 4Å: Chain B: K.170, N.171 Chain D: S.174, H.183 Ligand excluded by PLIP SO4.47: 3 residues within 4Å: Chain D: Y.219, R.222, H.226 Ligand excluded by PLIP

5 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.13: 8 residues within 4Å: Chain A: T.42, M.43, K.45, Q.46, V.47, Y.82, Y.87, Y.90 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.46, A:V.47, A:Y.82, A:Y.87 Water bridges: A:K.45, A:E.48 MES.14: 11 residues within 4Å: Chain A: F.38, P.71, G.74, D.75, P.76 Chain C: F.38, Q.69, D.70, P.71, G.74, P.76 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:F.38 Water bridges: C:G.74 MES.23: 9 residues within 4Å: Chain B: T.42, M.43, K.45, Q.46, V.47, Y.82, Y.87, Y.90 Ligands: SO4.6 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:K.45, B:Q.46, B:V.47, B:Y.82, B:Y.87, B:Y.90 Water bridges: B:E.48 MES.36: 9 residues within 4Å: Chain C: T.42, M.43, K.45, Q.46, V.47, Y.82, Y.87, Y.90 Ligands: SO4.30 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:Q.46, C:V.47, C:Y.82, C:Y.90 Water bridges: C:K.45, C:E.48 MES.48: 3 residues within 4Å: Chain D: F.14, E.96, K.97 1 PLIP interactions: 1 interactions with chain D pi-Cation interactions: D:F.14

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.15: 3 residues within 4Å: Chain A: R.158, W.209, H.213 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:W.209 Water bridges: A:R.158, A:H.213 GOL.16: 8 residues within 4Å: Chain A: P.221, R.222, S.223, L.270, G.271, Y.272, Y.286 Ligands: SO4.8 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:P.221, A:L.270 Water bridges: A:L.270, A:L.270 GOL.24: 7 residues within 4Å: Chain B: S.174 Chain D: E.166, K.170, N.171, F.172, P.173, S.174 10 PLIP interactions: 5 interactions with chain D, 5 interactions with chain B Hydrogen bonds: D:S.174, D:S.174, B:S.174, B:S.174, B:S.174 Water bridges: D:K.170, D:K.170, D:N.171, B:S.174, B:S.174 GOL.37: 2 residues within 4Å: Chain C: N.262, K.277 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:N.262, C:K.277 GOL.49: 4 residues within 4Å: Chain D: S.223, P.224, V.225, Y.272 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:S.223, D:V.225

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, Y. et al., Crystal Structure of the Luciferase-like Monooxygenase from Bacillus cereus. To be Published

Release Date

2005-11-22

Peptides

Luciferase-like monooxygenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Luciferase-like monooxygenase

Related Entries With Identical Sequence