SMTL ID : 2b81.4 (3 other biounits)

Crystal Structure of the Luciferase-like Monooxygenase from Bacillus cereus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-tetramer

Ligands

39 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: T.152, G.154, E.155, R.158 Ligand excluded by PLIP SO4.2: 2 residues within 4Å: Chain A: R.153, Q.204 Ligand excluded by PLIP SO4.3: 4 residues within 4Å: Chain A: R.140, S.149, H.150, E.151 Ligand excluded by PLIP SO4.4: 3 residues within 4Å: Chain A: K.170, F.172, S.174 Ligand excluded by PLIP SO4.5: 2 residues within 4Å: Chain A: P.261, R.276 Ligand excluded by PLIP SO4.6: 6 residues within 4Å: Chain A: P.41, T.42, I.81, Y.82 Chain B: Q.124 Ligands: MES.12 Ligand excluded by PLIP SO4.7: 3 residues within 4Å: Chain A: Y.219, R.222, H.226 Ligand excluded by PLIP SO4.8: 3 residues within 4Å: Chain A: R.158, W.209, H.213 Ligand excluded by PLIP SO4.9: 6 residues within 4Å: Chain A: T.200, G.201, F.202, S.203, Q.204, Y.220 Ligand excluded by PLIP SO4.10: 3 residues within 4Å: Chain A: R.222, S.223, H.226 Ligand excluded by PLIP SO4.11: 3 residues within 4Å: Chain A: G.229, A.230, Q.233 Ligand excluded by PLIP SO4.14: 6 residues within 4Å: Chain B: M.43, K.45, Q.46, V.47, Y.87, Y.90 Ligand excluded by PLIP SO4.15: 4 residues within 4Å: Chain B: R.140, S.149, H.150, E.151 Ligand excluded by PLIP SO4.16: 2 residues within 4Å: Chain B: R.276, K.277 Ligand excluded by PLIP SO4.17: 4 residues within 4Å: Chain B: N.171, N.186, L.187, K.190 Ligand excluded by PLIP SO4.18: 4 residues within 4Å: Chain B: N.12, H.13, F.14, N.17 Ligand excluded by PLIP SO4.19: 5 residues within 4Å: Chain B: R.64, D.75, H.254, R.269, F.299 Ligand excluded by PLIP SO4.20: 4 residues within 4Å: Chain B: G.201, F.202, S.203, Y.220 Ligand excluded by PLIP SO4.21: 6 residues within 4Å: Chain B: L.257, S.258, E.259, R.273, Q.302, R.303 Ligand excluded by PLIP SO4.22: 2 residues within 4Å: Chain B: S.174, H.183 Ligand excluded by PLIP SO4.23: 3 residues within 4Å: Chain B: Y.219, R.222, H.226 Ligand excluded by PLIP SO4.26: 3 residues within 4Å: Chain C: S.149, H.150, E.151 Ligand excluded by PLIP SO4.27: 1 residues within 4Å: Chain C: K.277 Ligand excluded by PLIP SO4.28: 4 residues within 4Å: Chain C: N.12, H.13, F.14, N.17 Ligand excluded by PLIP SO4.29: 5 residues within 4Å: Chain C: G.201, F.202, S.203, Q.204, Y.220 Ligand excluded by PLIP SO4.30: 4 residues within 4Å: Chain C: T.152, G.154, E.155, R.158 Ligand excluded by PLIP SO4.31: 5 residues within 4Å: Chain C: Q.124 Chain D: T.42, M.43, Y.82 Ligands: MES.48 Ligand excluded by PLIP SO4.32: 4 residues within 4Å: Chain C: R.276, K.277, I.280, E.315 Ligand excluded by PLIP SO4.33: 5 residues within 4Å: Chain C: P.221, R.222, S.223, H.226 Ligands: GOL.41 Ligand excluded by PLIP SO4.34: 4 residues within 4Å: Chain C: S.223, P.224, V.225, I.285 Ligand excluded by PLIP SO4.35: 2 residues within 4Å: Chain C: Y.219, R.222 Ligand excluded by PLIP SO4.36: 2 residues within 4Å: Chain C: F.38, H.39 Ligand excluded by PLIP SO4.37: 3 residues within 4Å: Chain C: H.150, E.151, R.153 Ligand excluded by PLIP SO4.42: 7 residues within 4Å: Chain D: D.138, T.200, G.201, F.202, S.203, Q.204, Y.220 Ligand excluded by PLIP SO4.43: 3 residues within 4Å: Chain D: R.222, S.223, H.226 Ligand excluded by PLIP SO4.44: 2 residues within 4Å: Chain D: P.261, R.276 Ligand excluded by PLIP SO4.45: 3 residues within 4Å: Chain D: S.149, H.150, E.151 Ligand excluded by PLIP SO4.46: 4 residues within 4Å: Chain D: T.152, G.154, E.155, R.158 Ligand excluded by PLIP SO4.47: 4 residues within 4Å: Chain B: R.264 Chain D: Y.219, R.222, H.226 Ligand excluded by PLIP

5 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.12: 9 residues within 4Å: Chain A: T.42, M.43, K.45, Q.46, V.47, Y.82, Y.87, Y.90 Ligands: SO4.6 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.46, A:V.47, A:Y.82, A:Y.90 Water bridges: A:K.45, A:E.48 MES.24: 3 residues within 4Å: Chain B: F.14, E.96, K.97 1 PLIP interactions: 1 interactions with chain B pi-Cation interactions: B:F.14 MES.38: 8 residues within 4Å: Chain C: T.42, M.43, K.45, Q.46, V.47, Y.82, Y.87, Y.90 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:Q.46, C:V.47, C:Y.82, C:Y.87 Water bridges: C:K.45, C:E.48 MES.39: 5 residues within 4Å: Chain C: F.38, P.71, G.74, D.75, P.76 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:F.38 MES.48: 9 residues within 4Å: Chain D: T.42, M.43, K.45, Q.46, V.47, Y.82, Y.87, Y.90 Ligands: SO4.31 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:K.45, D:Q.46, D:V.47, D:Y.82, D:Y.87, D:Y.90 Water bridges: D:E.48

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.13: 2 residues within 4Å: Chain A: N.262, K.277 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.262, A:K.277 GOL.25: 8 residues within 4Å: Chain B: S.223, P.224, V.225, Y.272 Chain D: S.223, P.224, V.225, Y.272 6 PLIP interactions: 2 interactions with chain B, 4 interactions with chain D Hydrogen bonds: B:S.223, B:V.225, D:S.223, D:S.223, D:Y.272 Water bridges: D:V.225 GOL.40: 3 residues within 4Å: Chain C: R.158, W.209, H.213 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:W.209 Water bridges: C:R.158, C:H.213 GOL.41: 8 residues within 4Å: Chain C: P.221, R.222, S.223, L.270, G.271, Y.272, Y.286 Ligands: SO4.33 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:P.221, C:L.270 Water bridges: C:L.270, C:L.270 GOL.49: 1 residues within 4Å: Chain D: S.174 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:S.174, D:S.174, D:S.174 Water bridges: D:S.174, D:S.174

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, Y. et al., Crystal Structure of the Luciferase-like Monooxygenase from Bacillus cereus. To be Published

Release Date

2005-11-22

Peptides

Luciferase-like monooxygenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

C
A

D
B

Luciferase-like monooxygenase

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