SMTL ID : 2bmd.1

high resolution structure of GDP-bound human Rab4a

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 18 residues within 4Å: Chain A: N.18, A.19, G.20, T.21, G.22, K.23, S.24, C.25, F.35, A.67, E.70, N.123, K.124, D.126, L.127, S.153, A.154, L.155 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:G.20, A:T.21, A:G.22, A:K.23, A:S.24, A:C.25, A:E.70, A:N.123, A:K.124, A:K.124, A:A.154, A:L.155 Water bridges: A:S.24, A:S.24, A:G.68 Salt bridges: A:K.23, A:D.126 pi-Stacking: A:F.35, A:F.35

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: E.70, R.71, F.72, N.103, W.104, D.107 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.70, A:R.71, A:D.107 Water bridges: A:R.71 GOL.3: 5 residues within 4Å: Chain A: Y.98, N.99, L.101, T.102, F.141 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.98, A:T.102, A:T.102 Water bridges: A:N.103

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huber, S.K. et al., High Resolution Crystal Structures of Human Rab4A in its Active and Inactive Conformations. FEBS Lett. (2005)

Release Date

2005-04-25

Peptides

RAS-RELATED PROTEIN RAB4A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RAS-RELATED PROTEIN RAB4A

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