2bu8.1 | SWISS-MODEL Template Library

SMTL ID : 2bu8.1

crystal structures of human pyruvate dehydrogenase kinase 2 containing physiological and synthetic ligands

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1:	16 residues within 4Å: Chain A: N.242, R.245, A.246, D.277, V.282, L.290, A.311, G.312, F.313, G.314, Y.315, G.316, L.317, P.318, T.341 Ligands: MG.2 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:N.242, A:R.245, A:D.277, A:G.312, A:G.316, A:L.317 Water bridges: A:N.242, A:A.243, A:Y.315, A:Y.315, A:T.341, A:T.341
ADP.4:	16 residues within 4Å: Chain B: N.242, R.245, A.246, D.277, V.282, L.290, A.311, G.312, F.313, G.314, Y.315, G.316, L.317, P.318, T.341 Ligands: MG.5 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:N.242, B:R.245, B:D.277, B:G.312, B:G.316, B:L.317 Water bridges: B:N.242, B:A.243, B:Y.315, B:Y.315, B:T.341, B:T.341

2 x MG: MAGNESIUM ION(Non-covalent)

2 x TF4: DICHLORO-ACETIC ACID(Non-covalent)

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Knoechel, T.R. et al., Regulatory Roles of the N-Terminal Domain Based on Crystal Structures of Human Pyruvate Dehydrogenase Kinase 2 Containing Physiological and Synthetic Ligands. Biochemistry (2006)

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