SMTL ID : 8zm2.1

Structure of human pyruvate dehydrogenase kinase 2 complexed with compound 16

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.34 Å

Oligo State

homo-dimer

Ligands

2 x 01: methyl (9~{R})-9-oxidanyl-9-(trifluoromethyl)fluorene-4-carboxylate

01.1: 16 residues within 4Å: Chain A: L.18, F.23, F.26, G.27, N.30, A.31, C.32, T.35, S.36, F.39, L.40, L.155, Q.158, H.159, I.162, F.163 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:F.26, A:T.35, A:F.39, A:F.39, A:Q.158, A:I.162, A:F.163, A:F.163 Hydrogen bonds: A:C.32, A:S.36 pi-Stacking: A:F.26 01.2: 16 residues within 4Å: Chain B: L.18, F.23, F.26, G.27, N.30, A.31, C.32, T.35, S.36, F.39, L.40, L.155, Q.158, H.159, I.162, F.163 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:F.26, B:T.35, B:F.39, B:F.39, B:Q.158, B:I.162, B:F.163, B:F.163 Hydrogen bonds: B:C.32, B:S.36 pi-Stacking: B:F.26

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Inoue, M. et al., Design and synthesis of novel fluorene derivatives as inhibitors of pyruvate dehydrogenase kinase. Bioorg.Med.Chem.Lett. (2024)

Release Date

2024-06-19

Peptides

[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrial: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrial

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