SMTL ID : 2buk.3 (5 other biounits)

SATELLITE TOBACCO NECROSIS VIRUS

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

homo-pentamer

Ligands

15 x CA: CALCIUM ION(Non-covalent)

CA.1: 1 residues within 4Å: Chain A: E.26 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.26, H2O.1, H2O.1 CA.2: 1 residues within 4Å: Chain A: D.56 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.56, H2O.3 CA.3: 9 residues within 4Å: Chain A: T.139 Chain B: T.139 Chain C: T.139 Chain D: T.139 Chain E: T.139 Ligands: CA.6, CA.9, CA.12, CA.15 6 PLIP interactions: 6 Ligand-Water interactions Metal complexes: H2O.11, H2O.17, H2O.17, H2O.23, H2O.23, H2O.30 CA.4: 1 residues within 4Å: Chain B: E.26 3 PLIP interactions: 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.26, H2O.7, H2O.7 CA.5: 1 residues within 4Å: Chain B: D.56 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.56, H2O.9 CA.6: 9 residues within 4Å: Chain A: T.139 Chain B: T.139 Chain C: T.139 Chain D: T.139 Chain E: T.139 Ligands: CA.3, CA.9, CA.12, CA.15 6 PLIP interactions: 6 Ligand-Water interactions Metal complexes: H2O.5, H2O.17, H2O.23, H2O.23, H2O.29, H2O.30 CA.7: 1 residues within 4Å: Chain C: E.26 3 PLIP interactions: 1 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:E.26, H2O.13, H2O.13 CA.8: 1 residues within 4Å: Chain C: D.56 2 PLIP interactions: 1 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.56, H2O.15 CA.9: 9 residues within 4Å: Chain A: T.139 Chain B: T.139 Chain C: T.139 Chain D: T.139 Chain E: T.139 Ligands: CA.3, CA.6, CA.12, CA.15 6 PLIP interactions: 6 Ligand-Water interactions Metal complexes: H2O.5, H2O.5, H2O.11, H2O.17, H2O.29, H2O.30 CA.10: 1 residues within 4Å: Chain D: E.26 3 PLIP interactions: 1 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:E.26, H2O.19, H2O.19 CA.11: 1 residues within 4Å: Chain D: D.56 2 PLIP interactions: 1 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:D.56, H2O.21 CA.12: 9 residues within 4Å: Chain A: T.139 Chain B: T.139 Chain C: T.139 Chain D: T.139 Chain E: T.139 Ligands: CA.3, CA.6, CA.9, CA.15 6 PLIP interactions: 6 Ligand-Water interactions Metal complexes: H2O.5, H2O.5, H2O.11, H2O.11, H2O.17, H2O.17 CA.13: 1 residues within 4Å: Chain E: E.26 3 PLIP interactions: 1 interactions with chain E, 2 Ligand-Water interactions Metal complexes: E:E.26, H2O.25, H2O.25 CA.14: 1 residues within 4Å: Chain E: D.56 2 PLIP interactions: 1 interactions with chain E, 1 Ligand-Water interactions Metal complexes: E:D.56, H2O.27 CA.15: 9 residues within 4Å: Chain A: T.139 Chain B: T.139 Chain C: T.139 Chain D: T.139 Chain E: T.139 Ligands: CA.3, CA.6, CA.9, CA.12 6 PLIP interactions: 6 Ligand-Water interactions Metal complexes: H2O.5, H2O.11, H2O.11, H2O.17, H2O.17, H2O.23

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jones, T.A. et al., Structure of Satellite Tobacco Necrosis Virus After Crystallographic Refinement at 2.5 A Resolution. J.Mol.Biol. (1984)

Release Date

2005-08-18

Peptides

COAT PROTEIN: ABCDE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

COAT PROTEIN

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