- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 6.00 Å
- Oligo State
- homo-60-mer
- Ligands
- 60 x A- A- A: RNA (5'-R(P*AP*AP*A)-3')(Non-functional Binders)
- 60 x U- U- U- U: RNA (5'-R(P*UP*UP*UP*U)-3')(Non-covalent)
U-U-U-U.2: 7 residues within 4Å:- Chain A: M.14, R.15, K.18, R.19
- Ligands: A-A-A.1, A-A-A.1, A-A-A.1
Protein-ligand interaction information (PLIP) not availableU-U-U-U.4: 7 residues within 4Å:- Chain B: M.14, R.15, K.18, R.19
- Ligands: A-A-A.3, A-A-A.3, A-A-A.3
Protein-ligand interaction information (PLIP) not availableU-U-U-U.6: 7 residues within 4Å:- Chain C: M.14, R.15, K.18, R.19
- Ligands: A-A-A.5, A-A-A.5, A-A-A.5
Protein-ligand interaction information (PLIP) not availableU-U-U-U.8: 7 residues within 4Å:- Chain D: M.14, R.15, K.18, R.19
- Ligands: A-A-A.7, A-A-A.7, A-A-A.7
Protein-ligand interaction information (PLIP) not availableU-U-U-U.10: 7 residues within 4Å:- Chain E: M.14, R.15, K.18, R.19
- Ligands: A-A-A.9, A-A-A.9, A-A-A.9
Protein-ligand interaction information (PLIP) not availableU-U-U-U.12: 7 residues within 4Å:- Chain F: M.14, R.15, K.18, R.19
- Ligands: A-A-A.11, A-A-A.11, A-A-A.11
Protein-ligand interaction information (PLIP) not availableU-U-U-U.14: 7 residues within 4Å:- Chain G: M.14, R.15, K.18, R.19
- Ligands: A-A-A.13, A-A-A.13, A-A-A.13
Protein-ligand interaction information (PLIP) not availableU-U-U-U.16: 7 residues within 4Å:- Chain H: M.14, R.15, K.18, R.19
- Ligands: A-A-A.15, A-A-A.15, A-A-A.15
Protein-ligand interaction information (PLIP) not availableU-U-U-U.18: 7 residues within 4Å:- Chain I: M.14, R.15, K.18, R.19
- Ligands: A-A-A.17, A-A-A.17, A-A-A.17
Protein-ligand interaction information (PLIP) not availableU-U-U-U.20: 7 residues within 4Å:- Chain J: M.14, R.15, K.18, R.19
- Ligands: A-A-A.19, A-A-A.19, A-A-A.19
Protein-ligand interaction information (PLIP) not availableU-U-U-U.22: 7 residues within 4Å:- Chain K: M.14, R.15, K.18, R.19
- Ligands: A-A-A.21, A-A-A.21, A-A-A.21
Protein-ligand interaction information (PLIP) not availableU-U-U-U.24: 7 residues within 4Å:- Chain L: M.14, R.15, K.18, R.19
- Ligands: A-A-A.23, A-A-A.23, A-A-A.23
Protein-ligand interaction information (PLIP) not availableU-U-U-U.26: 7 residues within 4Å:- Chain M: M.14, R.15, K.18, R.19
- Ligands: A-A-A.25, A-A-A.25, A-A-A.25
Protein-ligand interaction information (PLIP) not availableU-U-U-U.28: 7 residues within 4Å:- Chain N: M.14, R.15, K.18, R.19
- Ligands: A-A-A.27, A-A-A.27, A-A-A.27
Protein-ligand interaction information (PLIP) not availableU-U-U-U.30: 7 residues within 4Å:- Chain O: M.14, R.15, K.18, R.19
- Ligands: A-A-A.29, A-A-A.29, A-A-A.29
Protein-ligand interaction information (PLIP) not availableU-U-U-U.32: 7 residues within 4Å:- Chain P: M.14, R.15, K.18, R.19
- Ligands: A-A-A.31, A-A-A.31, A-A-A.31
Protein-ligand interaction information (PLIP) not availableU-U-U-U.34: 7 residues within 4Å:- Chain Q: M.14, R.15, K.18, R.19
- Ligands: A-A-A.33, A-A-A.33, A-A-A.33
Protein-ligand interaction information (PLIP) not availableU-U-U-U.36: 7 residues within 4Å:- Chain R: M.14, R.15, K.18, R.19
- Ligands: A-A-A.35, A-A-A.35, A-A-A.35
Protein-ligand interaction information (PLIP) not availableU-U-U-U.38: 7 residues within 4Å:- Chain S: M.14, R.15, K.18, R.19
- Ligands: A-A-A.37, A-A-A.37, A-A-A.37
Protein-ligand interaction information (PLIP) not availableU-U-U-U.40: 7 residues within 4Å:- Chain T: M.14, R.15, K.18, R.19
- Ligands: A-A-A.39, A-A-A.39, A-A-A.39
Protein-ligand interaction information (PLIP) not availableU-U-U-U.42: 7 residues within 4Å:- Chain U: M.14, R.15, K.18, R.19
- Ligands: A-A-A.41, A-A-A.41, A-A-A.41
Protein-ligand interaction information (PLIP) not availableU-U-U-U.44: 7 residues within 4Å:- Chain V: M.14, R.15, K.18, R.19
- Ligands: A-A-A.43, A-A-A.43, A-A-A.43
Protein-ligand interaction information (PLIP) not availableU-U-U-U.46: 7 residues within 4Å:- Chain W: M.14, R.15, K.18, R.19
- Ligands: A-A-A.45, A-A-A.45, A-A-A.45
Protein-ligand interaction information (PLIP) not availableU-U-U-U.48: 7 residues within 4Å:- Chain X: M.14, R.15, K.18, R.19
- Ligands: A-A-A.47, A-A-A.47, A-A-A.47
Protein-ligand interaction information (PLIP) not availableU-U-U-U.50: 7 residues within 4Å:- Chain Y: M.14, R.15, K.18, R.19
- Ligands: A-A-A.49, A-A-A.49, A-A-A.49
Protein-ligand interaction information (PLIP) not availableU-U-U-U.52: 7 residues within 4Å:- Chain Z: M.14, R.15, K.18, R.19
- Ligands: A-A-A.51, A-A-A.51, A-A-A.51
Protein-ligand interaction information (PLIP) not availableU-U-U-U.54: 7 residues within 4Å:- Chain 0: M.14, R.15, K.18, R.19
- Ligands: A-A-A.53, A-A-A.53, A-A-A.53
Protein-ligand interaction information (PLIP) not availableU-U-U-U.56: 7 residues within 4Å:- Chain 1: M.14, R.15, K.18, R.19
- Ligands: A-A-A.55, A-A-A.55, A-A-A.55
Protein-ligand interaction information (PLIP) not availableU-U-U-U.58: 7 residues within 4Å:- Chain 2: M.14, R.15, K.18, R.19
- Ligands: A-A-A.57, A-A-A.57, A-A-A.57
Protein-ligand interaction information (PLIP) not availableU-U-U-U.60: 7 residues within 4Å:- Chain 3: M.14, R.15, K.18, R.19
- Ligands: A-A-A.59, A-A-A.59, A-A-A.59
Protein-ligand interaction information (PLIP) not availableU-U-U-U.62: 7 residues within 4Å:- Chain 4: M.14, R.15, K.18, R.19
- Ligands: A-A-A.61, A-A-A.61, A-A-A.61
Protein-ligand interaction information (PLIP) not availableU-U-U-U.64: 7 residues within 4Å:- Chain 5: M.14, R.15, K.18, R.19
- Ligands: A-A-A.63, A-A-A.63, A-A-A.63
Protein-ligand interaction information (PLIP) not availableU-U-U-U.66: 7 residues within 4Å:- Chain 6: M.14, R.15, K.18, R.19
- Ligands: A-A-A.65, A-A-A.65, A-A-A.65
Protein-ligand interaction information (PLIP) not availableU-U-U-U.68: 7 residues within 4Å:- Chain 7: M.14, R.15, K.18, R.19
- Ligands: A-A-A.67, A-A-A.67, A-A-A.67
Protein-ligand interaction information (PLIP) not availableU-U-U-U.70: 7 residues within 4Å:- Chain 8: M.14, R.15, K.18, R.19
- Ligands: A-A-A.69, A-A-A.69, A-A-A.69
Protein-ligand interaction information (PLIP) not availableU-U-U-U.72: 7 residues within 4Å:- Chain 9: M.14, R.15, K.18, R.19
- Ligands: A-A-A.71, A-A-A.71, A-A-A.71
Protein-ligand interaction information (PLIP) not availableU-U-U-U.74: 7 residues within 4Å:- Ligands: A-A-A.73, A-A-A.73, A-A-A.73
- Chain a: M.14, R.15, K.18, R.19
Protein-ligand interaction information (PLIP) not availableU-U-U-U.76: 7 residues within 4Å:- Ligands: A-A-A.75, A-A-A.75, A-A-A.75
- Chain b: M.14, R.15, K.18, R.19
Protein-ligand interaction information (PLIP) not availableU-U-U-U.78: 7 residues within 4Å:- Ligands: A-A-A.77, A-A-A.77, A-A-A.77
- Chain c: M.14, R.15, K.18, R.19
Protein-ligand interaction information (PLIP) not availableU-U-U-U.80: 7 residues within 4Å:- Ligands: A-A-A.79, A-A-A.79, A-A-A.79
- Chain d: M.14, R.15, K.18, R.19
Protein-ligand interaction information (PLIP) not availableU-U-U-U.82: 7 residues within 4Å:- Ligands: A-A-A.81, A-A-A.81, A-A-A.81
- Chain e: M.14, R.15, K.18, R.19
Protein-ligand interaction information (PLIP) not availableU-U-U-U.84: 7 residues within 4Å:- Ligands: A-A-A.83, A-A-A.83, A-A-A.83
- Chain f: M.14, R.15, K.18, R.19
Protein-ligand interaction information (PLIP) not availableU-U-U-U.86: 7 residues within 4Å:- Ligands: A-A-A.85, A-A-A.85, A-A-A.85
- Chain g: M.14, R.15, K.18, R.19
Protein-ligand interaction information (PLIP) not availableU-U-U-U.88: 7 residues within 4Å:- Ligands: A-A-A.87, A-A-A.87, A-A-A.87
- Chain h: M.14, R.15, K.18, R.19
Protein-ligand interaction information (PLIP) not availableU-U-U-U.90: 7 residues within 4Å:- Ligands: A-A-A.89, A-A-A.89, A-A-A.89
- Chain i: M.14, R.15, K.18, R.19
Protein-ligand interaction information (PLIP) not availableU-U-U-U.92: 7 residues within 4Å:- Ligands: A-A-A.91, A-A-A.91, A-A-A.91
- Chain j: M.14, R.15, K.18, R.19
Protein-ligand interaction information (PLIP) not availableU-U-U-U.94: 7 residues within 4Å:- Ligands: A-A-A.93, A-A-A.93, A-A-A.93
- Chain k: M.14, R.15, K.18, R.19
Protein-ligand interaction information (PLIP) not availableU-U-U-U.96: 7 residues within 4Å:- Ligands: A-A-A.95, A-A-A.95, A-A-A.95
- Chain l: M.14, R.15, K.18, R.19
Protein-ligand interaction information (PLIP) not availableU-U-U-U.98: 7 residues within 4Å:- Ligands: A-A-A.97, A-A-A.97, A-A-A.97
- Chain m: M.14, R.15, K.18, R.19
Protein-ligand interaction information (PLIP) not availableU-U-U-U.100: 7 residues within 4Å:- Ligands: A-A-A.99, A-A-A.99, A-A-A.99
- Chain n: M.14, R.15, K.18, R.19
Protein-ligand interaction information (PLIP) not availableU-U-U-U.102: 7 residues within 4Å:- Ligands: A-A-A.101, A-A-A.101, A-A-A.101
- Chain o: M.14, R.15, K.18, R.19
Protein-ligand interaction information (PLIP) not availableU-U-U-U.104: 7 residues within 4Å:- Ligands: A-A-A.103, A-A-A.103, A-A-A.103
- Chain p: M.14, R.15, K.18, R.19
Protein-ligand interaction information (PLIP) not availableU-U-U-U.106: 7 residues within 4Å:- Ligands: A-A-A.105, A-A-A.105, A-A-A.105
- Chain q: M.14, R.15, K.18, R.19
Protein-ligand interaction information (PLIP) not availableU-U-U-U.108: 7 residues within 4Å:- Ligands: A-A-A.107, A-A-A.107, A-A-A.107
- Chain r: M.14, R.15, K.18, R.19
Protein-ligand interaction information (PLIP) not availableU-U-U-U.110: 7 residues within 4Å:- Ligands: A-A-A.109, A-A-A.109, A-A-A.109
- Chain s: M.14, R.15, K.18, R.19
Protein-ligand interaction information (PLIP) not availableU-U-U-U.112: 7 residues within 4Å:- Ligands: A-A-A.111, A-A-A.111, A-A-A.111
- Chain t: M.14, R.15, K.18, R.19
Protein-ligand interaction information (PLIP) not availableU-U-U-U.114: 7 residues within 4Å:- Ligands: A-A-A.113, A-A-A.113, A-A-A.113
- Chain u: M.14, R.15, K.18, R.19
Protein-ligand interaction information (PLIP) not availableU-U-U-U.116: 7 residues within 4Å:- Ligands: A-A-A.115, A-A-A.115, A-A-A.115
- Chain v: M.14, R.15, K.18, R.19
Protein-ligand interaction information (PLIP) not availableU-U-U-U.118: 7 residues within 4Å:- Ligands: A-A-A.117, A-A-A.117, A-A-A.117
- Chain w: M.14, R.15, K.18, R.19
Protein-ligand interaction information (PLIP) not availableU-U-U-U.120: 7 residues within 4Å:- Ligands: A-A-A.119, A-A-A.119, A-A-A.119
- Chain x: M.14, R.15, K.18, R.19
Protein-ligand interaction information (PLIP) not available- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lane, S.W. et al., Construction and crystal structure of recombinant STNV capsids. J.Mol.Biol. (2011)
- Release Date
- 2011-08-03
- Peptides
- Capsid protein: ABCDEFGHIJKLMNOPQRSTUVWXYZ0123456789abcdefghijklmnopqrstuvwx
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
AG
AH
AI
AJ
AK
AL
AM
AN
AO
AP
AQ
AR
AS
AT
AU
AV
AW
AX
AY
AZ
A0
A1
A2
A3
A4
A5
A6
A7
A8
A9
Aa
Ab
Ac
Ad
Ae
Af
Ag
Ah
Ai
Aj
Ak
Al
Am
An
Ao
Ap
Aq
Ar
As
At
Au
Av
Aw
Ax
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 6.00 Å
- Oligo State
- homo-60-mer
- Ligands
- 60 x A- A- A: RNA (5'-R(P*AP*AP*A)-3')(Non-functional Binders)
- 60 x U- U- U- U: RNA (5'-R(P*UP*UP*UP*U)-3')(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lane, S.W. et al., Construction and crystal structure of recombinant STNV capsids. J.Mol.Biol. (2011)
- Release Date
- 2011-08-03
- Peptides
- Capsid protein: ABCDEFGHIJKLMNOPQRSTUVWXYZ0123456789abcdefghijklmnopqrstuvwx
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
AG
AH
AI
AJ
AK
AL
AM
AN
AO
AP
AQ
AR
AS
AT
AU
AV
AW
AX
AY
AZ
A0
A1
A2
A3
A4
A5
A6
A7
A8
A9
Aa
Ab
Ac
Ad
Ae
Af
Ag
Ah
Ai
Aj
Ak
Al
Am
An
Ao
Ap
Aq
Ar
As
At
Au
Av
Aw
Ax
A