SMTL ID : 3s4g.3 (5 other biounits)

Low Resolution Structure of STNV complexed with RNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 6.00 Å

Oligo State

homo-pentamer

Ligands

5 x A- A- A: RNA (5'-R(P*AP*AP*A)-3')(Non-functional Binders)

A-A-A.1: 3 residues within 4Å: Ligands: U-U-U-U.2, U-U-U-U.2, U-U-U-U.2 Protein-ligand interaction information (PLIP) not available A-A-A.3: 3 residues within 4Å: Ligands: U-U-U-U.4, U-U-U-U.4, U-U-U-U.4 Protein-ligand interaction information (PLIP) not available A-A-A.5: 3 residues within 4Å: Ligands: U-U-U-U.6, U-U-U-U.6, U-U-U-U.6 Protein-ligand interaction information (PLIP) not available A-A-A.7: 3 residues within 4Å: Ligands: U-U-U-U.8, U-U-U-U.8, U-U-U-U.8 Protein-ligand interaction information (PLIP) not available A-A-A.9: 3 residues within 4Å: Ligands: U-U-U-U.10, U-U-U-U.10, U-U-U-U.10 Protein-ligand interaction information (PLIP) not available

5 x U- U- U- U: RNA (5'-R(P*UP*UP*UP*U)-3')(Non-covalent)

U-U-U-U.2: 7 residues within 4Å: Chain A: M.14, R.15, K.18, R.19 Ligands: A-A-A.1, A-A-A.1, A-A-A.1 Protein-ligand interaction information (PLIP) not available U-U-U-U.4: 7 residues within 4Å: Chain B: M.14, R.15, K.18, R.19 Ligands: A-A-A.3, A-A-A.3, A-A-A.3 Protein-ligand interaction information (PLIP) not available U-U-U-U.6: 7 residues within 4Å: Chain C: M.14, R.15, K.18, R.19 Ligands: A-A-A.5, A-A-A.5, A-A-A.5 Protein-ligand interaction information (PLIP) not available U-U-U-U.8: 7 residues within 4Å: Chain D: M.14, R.15, K.18, R.19 Ligands: A-A-A.7, A-A-A.7, A-A-A.7 Protein-ligand interaction information (PLIP) not available U-U-U-U.10: 7 residues within 4Å: Chain E: M.14, R.15, K.18, R.19 Ligands: A-A-A.9, A-A-A.9, A-A-A.9 Protein-ligand interaction information (PLIP) not available

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lane, S.W. et al., Construction and crystal structure of recombinant STNV capsids. J.Mol.Biol. (2011)

Release Date

2011-08-03

Peptides

Capsid protein: ABCDE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

Capsid protein

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