- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- hetero-12-12-mer
- Ligands
- 12 x FE: FE (III) ION(Non-covalent)
- 12 x DHB: 3,4-DIHYDROXYBENZOIC ACID(Non-covalent)
DHB.2: 11 residues within 4Å:- Chain A: P.19, Y.20, R.142
- Chain B: Y.109, Y.148, W.150, S.158, H.161, H.163, I.192
- Ligands: FE.1
9 PLIP interactions:3 interactions with chain A, 6 interactions with chain B- Hydrophobic interactions: A:P.19, A:Y.20, B:Y.148, B:I.192
- Water bridges: A:R.142, B:S.158
- Hydrogen bonds: B:Y.148
- pi-Stacking: B:W.150, B:W.150
DHB.4: 11 residues within 4Å:- Chain C: P.19, Y.20, R.142
- Chain D: Y.109, Y.148, W.150, S.158, H.161, H.163, I.192
- Ligands: FE.3
8 PLIP interactions:5 interactions with chain D, 3 interactions with chain C- Hydrophobic interactions: D:Y.148, D:I.192, C:P.19, C:Y.20
- Water bridges: D:S.158, C:R.142
- pi-Stacking: D:W.150, D:W.150
DHB.6: 11 residues within 4Å:- Chain E: P.19, Y.20, R.142
- Chain F: Y.109, Y.148, W.150, S.158, H.161, H.163, I.192
- Ligands: FE.5
9 PLIP interactions:6 interactions with chain F, 3 interactions with chain E- Hydrophobic interactions: F:Y.148, F:I.192, E:P.19, E:Y.20
- Water bridges: F:Y.25, F:S.158, E:R.142
- pi-Stacking: F:W.150, F:W.150
DHB.8: 11 residues within 4Å:- Chain G: P.19, Y.20, R.142
- Chain H: Y.109, Y.148, W.150, S.158, H.161, H.163, I.192
- Ligands: FE.7
9 PLIP interactions:6 interactions with chain H, 3 interactions with chain G- Hydrophobic interactions: H:Y.148, H:I.192, G:P.19, G:Y.20
- Hydrogen bonds: H:Y.148
- Water bridges: H:S.158, G:R.142
- pi-Stacking: H:W.150, H:W.150
DHB.10: 11 residues within 4Å:- Chain I: P.19, Y.20, R.142
- Chain J: Y.109, Y.148, W.150, S.158, H.161, H.163, I.192
- Ligands: FE.9
9 PLIP interactions:6 interactions with chain J, 3 interactions with chain I- Hydrophobic interactions: J:Y.148, J:I.192, I:P.19, I:Y.20
- Water bridges: J:Y.25, J:S.158, I:R.142
- pi-Stacking: J:W.150, J:W.150
DHB.12: 11 residues within 4Å:- Chain K: P.19, Y.20, R.142
- Chain L: Y.109, Y.148, W.150, S.158, H.161, H.163, I.192
- Ligands: FE.11
10 PLIP interactions:7 interactions with chain L, 3 interactions with chain K- Hydrophobic interactions: L:Y.148, L:I.192, K:P.19, K:Y.20
- Hydrogen bonds: L:Y.148
- Water bridges: L:Y.25, L:S.158, K:R.142
- pi-Stacking: L:W.150, L:W.150
DHB.14: 11 residues within 4Å:- Chain M: P.19, Y.20, R.142
- Chain N: Y.109, Y.148, W.150, S.158, H.161, H.163, I.192
- Ligands: FE.13
8 PLIP interactions:5 interactions with chain N, 3 interactions with chain M- Hydrophobic interactions: N:Y.148, N:I.192, M:P.19, M:Y.20
- Water bridges: N:S.158, M:R.142
- pi-Stacking: N:W.150, N:W.150
DHB.16: 11 residues within 4Å:- Chain O: P.19, Y.20, R.142
- Chain P: Y.109, Y.148, W.150, S.158, H.161, H.163, I.192
- Ligands: FE.15
11 PLIP interactions:8 interactions with chain P, 3 interactions with chain O- Hydrophobic interactions: P:Y.148, P:I.192, O:P.19, O:Y.20
- Hydrogen bonds: P:Y.109, P:Y.148
- Water bridges: P:S.158, P:H.163, O:R.142
- pi-Stacking: P:W.150, P:W.150
DHB.18: 11 residues within 4Å:- Chain Q: P.19, Y.20, R.142
- Chain R: Y.109, Y.148, W.150, S.158, H.161, H.163, I.192
- Ligands: FE.17
9 PLIP interactions:6 interactions with chain R, 3 interactions with chain Q- Hydrophobic interactions: R:Y.148, R:I.192, Q:P.19, Q:Y.20
- Hydrogen bonds: R:Y.148
- Water bridges: R:S.158, Q:R.142
- pi-Stacking: R:W.150, R:W.150
DHB.20: 11 residues within 4Å:- Chain S: P.19, Y.20, R.142
- Chain T: Y.109, Y.148, W.150, S.158, H.161, H.163, I.192
- Ligands: FE.19
9 PLIP interactions:3 interactions with chain S, 6 interactions with chain T- Hydrophobic interactions: S:P.19, S:Y.20, T:Y.148, T:I.192
- Water bridges: S:R.142, T:Y.25, T:S.158
- pi-Stacking: T:W.150, T:W.150
DHB.22: 11 residues within 4Å:- Chain U: P.19, Y.20, R.142
- Chain V: Y.109, Y.148, W.150, S.158, H.161, H.163, I.192
- Ligands: FE.21
10 PLIP interactions:7 interactions with chain V, 3 interactions with chain U- Hydrophobic interactions: V:Y.148, V:I.192, U:P.19, U:Y.20
- Hydrogen bonds: V:Y.148
- Water bridges: V:Y.25, V:S.158, U:R.142
- pi-Stacking: V:W.150, V:W.150
DHB.24: 11 residues within 4Å:- Chain W: P.19, Y.20, R.142
- Chain X: Y.109, Y.148, W.150, S.158, H.161, H.163, I.192
- Ligands: FE.23
9 PLIP interactions:6 interactions with chain X, 3 interactions with chain W- Hydrophobic interactions: X:Y.148, X:I.192, W:P.19, W:Y.20
- Water bridges: X:Y.25, X:S.158, W:R.142
- pi-Stacking: X:W.150, X:W.150
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Brown, C.K. et al., Biophysical Analyses of Designed and Selected Mutants of Protocatechuate 3,4-Dioxygenase. Annu.Rev.Microbiol. (2004)
- Release Date
- 2006-09-04
- Peptides
- PROTOCATECHUATE 3,4-DIOXYGENASE ALPHA CHAIN: ACEGIKMOQSUW
PROTOCATECHUATE 3,4-DIOXYGENASE BETA CHAIN: BDFHJLNPRTVX - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
AE
AG
AI
AK
AM
AO
AQ
AS
AU
AW
AB
BD
BF
BH
BJ
BL
BN
BP
BR
BT
BV
BX
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- hetero-12-12-mer
- Ligands
- 12 x FE: FE (III) ION(Non-covalent)
- 12 x DHB: 3,4-DIHYDROXYBENZOIC ACID(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Brown, C.K. et al., Biophysical Analyses of Designed and Selected Mutants of Protocatechuate 3,4-Dioxygenase. Annu.Rev.Microbiol. (2004)
- Release Date
- 2006-09-04
- Peptides
- PROTOCATECHUATE 3,4-DIOXYGENASE ALPHA CHAIN: ACEGIKMOQSUW
PROTOCATECHUATE 3,4-DIOXYGENASE BETA CHAIN: BDFHJLNPRTVX - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
AE
AG
AI
AK
AM
AO
AQ
AS
AU
AW
AB
BD
BF
BH
BJ
BL
BN
BP
BR
BT
BV
BX
B