- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.15 Å
- Oligo State
- homo-trimer
- Ligands
- 6 x CU: COPPER (II) ION(Non-covalent)
- 3 x MLI: MALONATE ION(Non-functional Binders)
MLI.3: 9 residues within 4Å:- Chain A: R.250, D.251, R.253
- Chain C: R.250, R.253, N.307, E.310
- Ligands: MLI.11, MLI.19
17 PLIP interactions:7 interactions with chain C, 7 interactions with chain A, 3 interactions with chain B- Hydrogen bonds: C:N.307, A:D.251, A:R.253
- Water bridges: C:R.250, C:R.250, C:E.310, A:R.250, A:R.250, A:R.250, B:D.251, B:D.251, B:D.251
- Salt bridges: C:R.250, C:R.253, C:R.253, A:R.250, A:R.250
MLI.11: 9 residues within 4Å:- Chain A: R.250, R.253, N.307, E.310
- Chain B: R.250, D.251, R.253
- Ligands: MLI.3, MLI.19
18 PLIP interactions:6 interactions with chain A, 9 interactions with chain B, 3 interactions with chain C- Hydrogen bonds: A:N.307, B:D.251, B:D.251, B:R.253
- Water bridges: A:R.250, A:R.250, B:R.250, B:R.250, B:R.250, B:R.250, C:D.251, C:D.251, C:D.251
- Salt bridges: A:R.250, A:R.253, A:R.253, B:R.250, B:R.250
MLI.19: 9 residues within 4Å:- Chain B: R.250, R.253, N.307, E.310
- Chain C: R.250, D.251, R.253
- Ligands: MLI.3, MLI.11
15 PLIP interactions:7 interactions with chain B, 8 interactions with chain C- Hydrogen bonds: B:N.307, C:D.251, C:D.251, C:R.253
- Water bridges: B:R.250, B:R.250, B:E.310, C:R.250, C:R.250, C:R.250
- Salt bridges: B:R.250, B:R.253, B:R.253, C:R.250, C:R.250
- 9 x ACT: ACETATE ION(Non-functional Binders)
ACT.4: 4 residues within 4Å:- Chain A: T.228, G.229, A.232, H.319
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:G.229
- Water bridges: A:H.319
- Salt bridges: A:H.319
ACT.5: 3 residues within 4Å:- Chain A: F.312, A.317, H.319
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:A.317
- Salt bridges: A:H.319
ACT.8: 7 residues within 4Å:- Chain A: D.275, Q.278
- Chain B: W.265, T.267, G.268, K.269, N.272
8 PLIP interactions:7 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:W.265
- Hydrogen bonds: B:T.267, B:T.267, B:K.269, B:N.272, A:Q.278
- Water bridges: B:A.266, B:T.267
ACT.12: 4 residues within 4Å:- Chain B: T.228, G.229, A.232, H.319
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:G.229
- Salt bridges: B:H.319
ACT.13: 3 residues within 4Å:- Chain B: F.312, A.317, H.319
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:A.317
- Salt bridges: B:H.319
ACT.16: 7 residues within 4Å:- Chain B: D.275, Q.278
- Chain C: W.265, T.267, G.268, K.269, N.272
8 PLIP interactions:7 interactions with chain C, 1 interactions with chain B- Hydrophobic interactions: C:W.265
- Hydrogen bonds: C:T.267, C:T.267, C:K.269, C:N.272, B:Q.278
- Water bridges: C:A.266, C:T.267
ACT.20: 4 residues within 4Å:- Chain C: T.228, G.229, A.232, H.319
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:G.229
- Water bridges: C:H.319
- Salt bridges: C:H.319
ACT.21: 3 residues within 4Å:- Chain C: F.312, A.317, H.319
2 PLIP interactions:2 interactions with chain C- Hydrophobic interactions: C:A.317
- Salt bridges: C:H.319
ACT.24: 7 residues within 4Å:- Chain A: W.265, T.267, G.268, K.269, N.272
- Chain C: D.275, Q.278
7 PLIP interactions:6 interactions with chain A, 1 interactions with chain C- Hydrophobic interactions: A:W.265
- Hydrogen bonds: A:T.267, A:K.269, A:N.272, C:Q.278
- Water bridges: A:A.266, A:T.267
- 3 x HOA: HYDROXYAMINE(Non-covalent)
HOA.6: 9 residues within 4Å:- Chain A: D.98, H.100, H.135
- Chain C: H.255, I.257, H.306, L.308
- Ligands: CU.2, NO2.7
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain C- Hydrogen bonds: A:H.135, C:H.255
HOA.14: 9 residues within 4Å:- Chain A: H.255, I.257, H.306, L.308
- Chain B: D.98, H.100, H.135
- Ligands: CU.10, NO2.15
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:H.255, B:H.135
HOA.22: 9 residues within 4Å:- Chain B: H.255, I.257, H.306, L.308
- Chain C: D.98, H.100, H.135
- Ligands: CU.18, NO2.23
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain C- Hydrogen bonds: B:H.255, C:H.135
- 3 x NO2: NITRITE ION(Non-covalent)
NO2.7: 9 residues within 4Å:- Chain A: D.98, H.100, H.135
- Chain C: H.255, I.257, H.306, L.308
- Ligands: CU.2, HOA.6
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain C- Hydrogen bonds: A:D.98
- Water bridges: C:G.258
NO2.15: 9 residues within 4Å:- Chain A: H.255, I.257, H.306, L.308
- Chain B: D.98, H.100, H.135
- Ligands: CU.10, HOA.14
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain B- Water bridges: A:G.258
- Hydrogen bonds: B:D.98
NO2.23: 9 residues within 4Å:- Chain B: H.255, I.257, H.306, L.308
- Chain C: D.98, H.100, H.135
- Ligands: CU.18, HOA.22
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain C- Water bridges: B:G.258
- Hydrogen bonds: C:D.98
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Antonyuk, S.V. et al., Atomic Resolution Structures of Resting-State, Substrate- and Product-Complexed Cu-Nitrite Reductase Provide Insight Into Catalytic Mechanism. Proc.Natl.Acad.Sci.USA (2005)
- Release Date
- 2005-08-17
- Peptides
- COPPER-CONTAINING NITRITE REDUCTASE: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.15 Å
- Oligo State
- homo-trimer
- Ligands
- 6 x CU: COPPER (II) ION(Non-covalent)
- 3 x MLI: MALONATE ION(Non-functional Binders)
- 9 x ACT: ACETATE ION(Non-functional Binders)
- 3 x HOA: HYDROXYAMINE(Non-covalent)
- 3 x NO2: NITRITE ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Antonyuk, S.V. et al., Atomic Resolution Structures of Resting-State, Substrate- and Product-Complexed Cu-Nitrite Reductase Provide Insight Into Catalytic Mechanism. Proc.Natl.Acad.Sci.USA (2005)
- Release Date
- 2005-08-17
- Peptides
- COPPER-CONTAINING NITRITE REDUCTASE: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A