SMTL ID : 6gtj.1

Neutron crystal structure for copper nitrite reductase from Achromobacter Cycloclastes at 1.8 A resolution

Coordinates

PDB Format

Method

NEUTRON DIFFRACTION 1.80 Å

Oligo State

homo-trimer

Ligands

6 x CU: COPPER (II) ION(Non-covalent)

CU.1: 6 residues within 4Å: Chain A: H.95, N.96, C.136, P.138, H.145, M.150 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.95, A:C.136, A:H.145 CU.2: 7 residues within 4Å: Chain A: D.98, H.100, H.135 Chain B: H.255, I.257, H.306, L.308 4 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: A:H.100, A:H.135, B:H.306, H2O.3 CU.3: 6 residues within 4Å: Chain B: H.95, N.96, C.136, P.138, H.145, M.150 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.95, B:C.136, B:H.145 CU.4: 7 residues within 4Å: Chain B: D.98, H.100, H.135 Chain C: H.255, I.257, H.306, L.308 4 PLIP interactions: 2 interactions with chain B, 1 interactions with chain C, 1 Ligand-Water interactions Metal complexes: B:H.100, B:H.135, C:H.306, H2O.11 CU.5: 6 residues within 4Å: Chain C: H.95, N.96, C.136, P.138, H.145, M.150 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:H.95, C:C.136, C:H.145 CU.6: 7 residues within 4Å: Chain A: H.255, I.257, H.306, L.308 Chain C: D.98, H.100, H.135 4 PLIP interactions: 1 interactions with chain A, 2 interactions with chain C, 1 Ligand-Water interactions Metal complexes: A:H.306, C:H.100, C:H.135, H2O.18

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Halsted, T.P. et al., Catalytically important damage-free structures of a copper nitrite reductase obtained by femtosecond X-ray laser and room-temperature neutron crystallography. Iucrj (2019)

Release Date

2019-07-03

Peptides

Copper-containing nitrite reductase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Copper-containing nitrite reductase

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