- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.95 Å
- Oligo State
- homo-trimer
- Ligands
- 6 x CU: COPPER (II) ION(Non-covalent)
- 3 x NO: NITRIC OXIDE(Non-covalent)
NO.3: 8 residues within 4Å:- Chain A: D.98, H.100, H.135
- Chain C: H.255, I.257, H.306, L.308
- Ligands: CU.2
No protein-ligand interaction detected (PLIP)NO.12: 8 residues within 4Å:- Chain A: H.255, I.257, H.306, L.308
- Chain B: D.98, H.100, H.135
- Ligands: CU.11
No protein-ligand interaction detected (PLIP)NO.21: 8 residues within 4Å:- Chain B: H.255, I.257, H.306, L.308
- Chain C: D.98, H.100, H.135
- Ligands: CU.20
No protein-ligand interaction detected (PLIP)- 6 x ACT: ACETATE ION(Non-functional Binders)
ACT.4: 8 residues within 4Å:- Chain A: W.265, A.266, T.267, G.268, K.269, N.272
- Chain C: D.275, Q.278
8 PLIP interactions:7 interactions with chain A, 1 interactions with chain C- Hydrophobic interactions: A:N.272
- Hydrogen bonds: A:A.266, A:T.267, A:G.268, A:K.269, A:N.272, C:Q.278
- Water bridges: A:V.264
ACT.5: 5 residues within 4Å:- Chain A: H.60, Y.196, E.197, T.198, P.199
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:E.197
- Salt bridges: A:H.60
ACT.13: 8 residues within 4Å:- Chain A: D.275, Q.278
- Chain B: W.265, A.266, T.267, G.268, K.269, N.272
9 PLIP interactions:8 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:N.272
- Hydrogen bonds: B:A.266, B:T.267, B:T.267, B:G.268, B:K.269, B:N.272, A:Q.278
- Water bridges: B:V.264
ACT.14: 5 residues within 4Å:- Chain B: H.60, Y.196, E.197, T.198, P.199
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:E.197
- Salt bridges: B:H.60
ACT.22: 8 residues within 4Å:- Chain B: D.275, Q.278
- Chain C: W.265, A.266, T.267, G.268, K.269, N.272
9 PLIP interactions:8 interactions with chain C, 1 interactions with chain B- Hydrophobic interactions: C:N.272
- Hydrogen bonds: C:A.266, C:T.267, C:T.267, C:G.268, C:K.269, C:N.272, B:Q.278
- Water bridges: C:V.264
ACT.23: 5 residues within 4Å:- Chain C: H.60, Y.196, E.197, T.198, P.199
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:E.197
- Salt bridges: C:H.60
- 12 x SO4: SULFATE ION(Non-functional Binders)
SO4.6: 4 residues within 4Å:- Chain A: D.188, E.189, K.194, K.208
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:E.189
- Salt bridges: A:K.194, A:K.208
SO4.7: 3 residues within 4Å:- Chain A: K.125, T.127
- Chain C: R.296
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain C- Salt bridges: A:K.125, C:R.296
SO4.8: 5 residues within 4Å:- Chain A: T.127, K.128, R.271
- Chain C: D.277, R.296
6 PLIP interactions:4 interactions with chain A, 2 interactions with chain C- Water bridges: A:K.128, A:K.128
- Salt bridges: A:K.128, A:R.271
- Hydrogen bonds: C:D.277, C:R.296
SO4.9: 4 residues within 4Å:- Chain A: T.228, G.229, D.230, H.231
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:D.230, A:D.230, A:D.230, A:H.231
- Water bridges: A:T.228, A:H.231
- Salt bridges: A:H.231
SO4.15: 4 residues within 4Å:- Chain B: D.188, E.189, K.194, K.208
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:E.189, B:E.189
- Salt bridges: B:K.194, B:K.208
SO4.16: 3 residues within 4Å:- Chain A: R.296
- Chain B: K.125, T.127
3 PLIP interactions:1 interactions with chain B, 2 interactions with chain A- Salt bridges: B:K.125, A:R.296
- Water bridges: A:D.329
SO4.17: 5 residues within 4Å:- Chain A: D.277, R.296
- Chain B: T.127, K.128, R.271
7 PLIP interactions:2 interactions with chain A, 5 interactions with chain B- Hydrogen bonds: A:D.277, A:R.296
- Water bridges: B:E.77, B:K.128, B:K.128
- Salt bridges: B:K.128, B:R.271
SO4.18: 4 residues within 4Å:- Chain B: T.228, G.229, D.230, H.231
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:D.230, B:D.230, B:D.230, B:H.231
- Water bridges: B:T.228, B:H.231
- Salt bridges: B:H.231
SO4.24: 4 residues within 4Å:- Chain C: D.188, E.189, K.194, K.208
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:E.189
- Salt bridges: C:K.194, C:K.208
SO4.25: 3 residues within 4Å:- Chain B: R.296
- Chain C: K.125, T.127
3 PLIP interactions:1 interactions with chain C, 2 interactions with chain B- Salt bridges: C:K.125, B:R.296
- Water bridges: B:D.329
SO4.26: 5 residues within 4Å:- Chain B: D.277, R.296
- Chain C: T.127, K.128, R.271
7 PLIP interactions:2 interactions with chain B, 5 interactions with chain C- Hydrogen bonds: B:D.277, B:R.296
- Water bridges: C:T.127, C:K.128, C:K.128
- Salt bridges: C:K.128, C:R.271
SO4.27: 4 residues within 4Å:- Chain C: T.228, G.229, D.230, H.231
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:D.230, C:D.230, C:H.231
- Water bridges: C:T.228, C:H.231
- Salt bridges: C:H.231
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Antonyuk, S.V. et al., Monitoring and Validating Active Site Redox States in Protein Crystals. Biochim.Biophys.Acta (2011)
- Release Date
- 2011-02-16
- Peptides
- COPPER-CONTAINING NITRITE REDUCTASE: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.95 Å
- Oligo State
- homo-trimer
- Ligands
- 6 x CU: COPPER (II) ION(Non-covalent)
- 3 x NO: NITRIC OXIDE(Non-covalent)
- 6 x ACT: ACETATE ION(Non-functional Binders)
- 12 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Antonyuk, S.V. et al., Monitoring and Validating Active Site Redox States in Protein Crystals. Biochim.Biophys.Acta (2011)
- Release Date
- 2011-02-16
- Peptides
- COPPER-CONTAINING NITRITE REDUCTASE: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A