- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.02 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x MG: MAGNESIUM ION(Non-covalent)
- 8 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
PGE.2: 4 residues within 4Å:- Chain A: D.97, V.152, V.156
- Ligands: PGE.3
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:D.155, A:D.155
PGE.3: 7 residues within 4Å:- Chain A: I.141, L.142, D.143, D.144, L.149, V.152
- Ligands: PGE.2
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:D.144
PGE.10: 4 residues within 4Å:- Chain C: D.97, V.152, V.156
- Ligands: PGE.11
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:D.155, C:D.155
PGE.11: 7 residues within 4Å:- Chain C: I.141, L.142, D.143, D.144, L.149, V.152
- Ligands: PGE.10
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:D.144
PGE.18: 4 residues within 4Å:- Chain E: D.97, V.152, V.156
- Ligands: PGE.19
2 PLIP interactions:2 interactions with chain E- Hydrogen bonds: E:D.155, E:D.155
PGE.19: 7 residues within 4Å:- Chain E: I.141, L.142, D.143, D.144, L.149, V.152
- Ligands: PGE.18
1 PLIP interactions:1 interactions with chain E- Hydrogen bonds: E:D.144
PGE.26: 4 residues within 4Å:- Chain G: D.97, V.152, V.156
- Ligands: PGE.27
2 PLIP interactions:2 interactions with chain G- Hydrogen bonds: G:D.155, G:D.155
PGE.27: 7 residues within 4Å:- Chain G: I.141, L.142, D.143, D.144, L.149, V.152
- Ligands: PGE.26
1 PLIP interactions:1 interactions with chain G- Hydrogen bonds: G:D.144
- 12 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.4: 4 residues within 4Å:- Chain A: G.183, A.251, E.252
- Chain D: Y.12
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:G.183
- Water bridges: A:A.184
PEG.7: 4 residues within 4Å:- Chain B: G.183, A.251, E.252
- Chain E: Y.12
No protein-ligand interaction detected (PLIP)PEG.8: 6 residues within 4Å:- Chain B: R.62, V.88, R.215, D.216, V.218, G.219
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:V.218
- Water bridges: B:R.62
PEG.12: 4 residues within 4Å:- Chain C: G.183, A.251, E.252
- Chain H: Y.12
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:G.183
- Water bridges: C:A.184
PEG.15: 4 residues within 4Å:- Chain A: Y.12
- Chain D: G.183, A.251, E.252
No protein-ligand interaction detected (PLIP)PEG.16: 6 residues within 4Å:- Chain D: R.62, V.88, R.215, D.216, V.218, G.219
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:V.218
- Water bridges: D:R.62
PEG.20: 4 residues within 4Å:- Chain B: Y.12
- Chain E: G.183, A.251, E.252
2 PLIP interactions:2 interactions with chain E- Hydrogen bonds: E:G.183
- Water bridges: E:A.184
PEG.23: 4 residues within 4Å:- Chain F: G.183, A.251, E.252
- Chain G: Y.12
No protein-ligand interaction detected (PLIP)PEG.24: 6 residues within 4Å:- Chain F: R.62, V.88, R.215, D.216, V.218, G.219
2 PLIP interactions:2 interactions with chain F- Hydrogen bonds: F:V.218
- Water bridges: F:R.62
PEG.28: 4 residues within 4Å:- Chain F: Y.12
- Chain G: G.183, A.251, E.252
2 PLIP interactions:2 interactions with chain G- Hydrogen bonds: G:G.183
- Water bridges: G:A.184
PEG.31: 4 residues within 4Å:- Chain C: Y.12
- Chain H: G.183, A.251, E.252
No protein-ligand interaction detected (PLIP)PEG.32: 6 residues within 4Å:- Chain H: R.62, V.88, R.215, D.216, V.218, G.219
2 PLIP interactions:2 interactions with chain H- Hydrogen bonds: H:V.218
- Water bridges: H:R.62
- 4 x CL: CHLORIDE ION(Non-functional Binders)
CL.6: 4 residues within 4Å:- Chain B: H.194, T.195, N.196, V.197
Ligand excluded by PLIPCL.14: 4 residues within 4Å:- Chain D: H.194, T.195, N.196, V.197
Ligand excluded by PLIPCL.22: 4 residues within 4Å:- Chain F: H.194, T.195, N.196, V.197
Ligand excluded by PLIPCL.30: 4 residues within 4Å:- Chain H: H.194, T.195, N.196, V.197
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Frere, F. et al., Probing the Active Site of Pseudomonas Aeruginosa Porphobilinogen Synthase Using Newly Developed Inhibitors. Biochemistry (2006)
- Release Date
- 2006-06-20
- Peptides
- DELTA-AMINOLEVULINIC ACID DEHYDRATASE: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
BG
AH
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.02 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x MG: MAGNESIUM ION(Non-covalent)
- 8 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- 12 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 4 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Frere, F. et al., Probing the Active Site of Pseudomonas Aeruginosa Porphobilinogen Synthase Using Newly Developed Inhibitors. Biochemistry (2006)
- Release Date
- 2006-06-20
- Peptides
- DELTA-AMINOLEVULINIC ACID DEHYDRATASE: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
BG
AH
B