- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.93 Å
- Oligo State
- homo-octamer
- Ligands
- 28 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
- 8 x NA: SODIUM ION(Non-functional Binders)
NA.6: 3 residues within 4Å:- Chain A: D.37, D.319
- Chain D: L.27
2 PLIP interactions:1 interactions with chain D, 1 interactions with chain A- Hydrogen bonds: D:L.27, A:D.37
NA.12: 3 residues within 4Å:- Chain B: D.37, D.319
- Chain E: L.27
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:D.37
NA.19: 3 residues within 4Å:- Chain C: D.37, D.319
- Chain H: L.27
2 PLIP interactions:1 interactions with chain H, 1 interactions with chain C- Hydrogen bonds: H:L.27, C:D.37
NA.25: 3 residues within 4Å:- Chain A: L.27
- Chain D: D.37, D.319
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:D.37
NA.32: 3 residues within 4Å:- Chain B: L.27
- Chain E: D.37, D.319
2 PLIP interactions:2 interactions with chain E- Hydrogen bonds: E:D.37, E:D.37
NA.38: 3 residues within 4Å:- Chain F: D.37, D.319
- Chain G: L.27
1 PLIP interactions:1 interactions with chain F- Hydrogen bonds: F:D.319
NA.45: 3 residues within 4Å:- Chain F: L.27
- Chain G: D.37, D.319
2 PLIP interactions:2 interactions with chain G- Hydrogen bonds: G:D.36, G:D.37
NA.51: 3 residues within 4Å:- Chain C: L.27
- Chain H: D.37, D.319
1 PLIP interactions:1 interactions with chain H- Hydrogen bonds: H:D.37
- 8 x CL: CHLORIDE ION(Non-functional Binders)
CL.7: 6 residues within 4Å:- Chain A: S.175, D.176, M.177, K.205, Y.232, Q.233
Ligand excluded by PLIPCL.9: 4 residues within 4Å:- Chain A: Y.147, N.150
- Chain E: T.195, N.196
Ligand excluded by PLIPCL.20: 6 residues within 4Å:- Chain C: S.175, D.176, M.177, K.205, Y.232, Q.233
Ligand excluded by PLIPCL.22: 4 residues within 4Å:- Chain A: T.195, N.196
- Chain C: Y.147, N.150
Ligand excluded by PLIPCL.33: 6 residues within 4Å:- Chain E: S.175, D.176, M.177, K.205, Y.232, Q.233
Ligand excluded by PLIPCL.35: 4 residues within 4Å:- Chain E: Y.147, N.150
- Chain G: T.195, N.196
Ligand excluded by PLIPCL.46: 6 residues within 4Å:- Chain G: S.175, D.176, M.177, K.205, Y.232, Q.233
Ligand excluded by PLIPCL.48: 4 residues within 4Å:- Chain C: T.195, N.196
- Chain G: Y.147, N.150
Ligand excluded by PLIP- 8 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
PGE.8: 8 residues within 4Å:- Chain A: Y.10, P.11, Y.12, R.14
- Chain B: D.151
- Chain D: E.187, E.190, S.191
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Y.10
- Water bridges: A:R.14
PGE.13: 7 residues within 4Å:- Chain A: D.151
- Chain B: Y.10, P.11, Y.12, R.14
- Chain E: E.190, S.191
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain E- Hydrogen bonds: B:Y.10, B:R.14, E:E.190
PGE.21: 8 residues within 4Å:- Chain C: Y.10, P.11, Y.12, R.14
- Chain D: D.151
- Chain H: E.187, E.190, S.191
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:Y.10
- Water bridges: C:R.14
PGE.26: 7 residues within 4Å:- Chain A: E.190, S.191
- Chain C: D.151
- Chain D: Y.10, P.11, Y.12, R.14
3 PLIP interactions:2 interactions with chain D, 1 interactions with chain A- Hydrogen bonds: D:Y.10, D:R.14, A:E.190
PGE.34: 8 residues within 4Å:- Chain B: E.187, E.190, S.191
- Chain E: Y.10, P.11, Y.12, R.14
- Chain F: D.151
2 PLIP interactions:2 interactions with chain E- Hydrogen bonds: E:Y.10
- Water bridges: E:R.14
PGE.39: 7 residues within 4Å:- Chain E: D.151
- Chain F: Y.10, P.11, Y.12, R.14
- Chain G: E.190, S.191
3 PLIP interactions:2 interactions with chain F, 1 interactions with chain G- Hydrogen bonds: F:Y.10, F:R.14, G:E.190
PGE.47: 8 residues within 4Å:- Chain F: E.187, E.190, S.191
- Chain G: Y.10, P.11, Y.12, R.14
- Chain H: D.151
2 PLIP interactions:2 interactions with chain G- Hydrogen bonds: G:Y.10
- Water bridges: G:R.14
PGE.52: 7 residues within 4Å:- Chain C: E.190, S.191
- Chain G: D.151
- Chain H: Y.10, P.11, Y.12, R.14
3 PLIP interactions:2 interactions with chain H, 1 interactions with chain C- Hydrogen bonds: H:Y.10, H:R.14, C:E.190
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Frere, F. et al., Probing the Active Site of Pseudomonas Aeruginosa Porphobilinogen Synthase Using Newly Developed Inhibitors. Biochemistry (2006)
- Release Date
- 2006-06-20
- Peptides
- DELTA-AMINOLEVULINIC ACID DEHYDRATASE: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
BG
AH
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.93 Å
- Oligo State
- homo-octamer
- Ligands
- 28 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
- 8 x NA: SODIUM ION(Non-functional Binders)
- 8 x CL: CHLORIDE ION(Non-functional Binders)
- 8 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Frere, F. et al., Probing the Active Site of Pseudomonas Aeruginosa Porphobilinogen Synthase Using Newly Developed Inhibitors. Biochemistry (2006)
- Release Date
- 2006-06-20
- Peptides
- DELTA-AMINOLEVULINIC ACID DEHYDRATASE: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
BG
AH
B