SMTL ID : 2c9o.2 (1 other biounit)

3D Structure of the human RuvB-like helicase RuvBL1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-hexamer

Ligands

6 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 19 residues within 4Å: Chain A: S.17, H.18, H.20, G.38, L.39, V.40, Q.42, P.71, P.72, G.73, T.74, G.75, K.76, T.77, A.78, Y.366, I.374, L.403, R.404 22 PLIP interactions: 22 interactions with chain A Hydrogen bonds: A:S.17, A:H.18, A:V.40, A:P.71, A:G.73, A:T.74, A:T.74, A:G.75, A:K.76, A:T.77, A:T.77, A:T.77, A:A.78, A:Y.366, A:Y.366 Water bridges: A:K.76, A:K.76, A:R.404, A:R.404 Salt bridges: A:H.18, A:K.76, A:R.404 ADP.2: 19 residues within 4Å: Chain B: S.17, H.18, H.20, G.38, L.39, V.40, P.71, P.72, G.73, T.74, G.75, K.76, T.77, A.78, Y.366, I.374, R.378, L.403, R.404 20 PLIP interactions: 20 interactions with chain B Hydrogen bonds: B:H.18, B:V.40, B:G.73, B:T.74, B:T.74, B:G.75, B:K.76, B:T.77, B:A.78, B:Y.366, B:Y.366 Water bridges: B:K.76, B:K.76, B:R.404, B:R.404, B:R.404, B:R.404 Salt bridges: B:H.18, B:K.76, B:R.404 ADP.3: 19 residues within 4Å: Chain C: S.17, H.18, H.20, G.38, L.39, V.40, Q.42, P.71, P.72, G.73, T.74, G.75, K.76, T.77, A.78, Y.366, I.374, L.403, R.404 22 PLIP interactions: 22 interactions with chain C Hydrogen bonds: C:S.17, C:H.18, C:V.40, C:P.71, C:G.73, C:T.74, C:T.74, C:G.75, C:K.76, C:T.77, C:T.77, C:T.77, C:A.78, C:Y.366, C:Y.366 Water bridges: C:K.76, C:K.76, C:R.404, C:R.404 Salt bridges: C:H.18, C:K.76, C:R.404 ADP.4: 19 residues within 4Å: Chain D: S.17, H.18, H.20, G.38, L.39, V.40, P.71, P.72, G.73, T.74, G.75, K.76, T.77, A.78, Y.366, I.374, R.378, L.403, R.404 20 PLIP interactions: 20 interactions with chain D Hydrogen bonds: D:H.18, D:V.40, D:G.73, D:T.74, D:T.74, D:G.75, D:K.76, D:T.77, D:A.78, D:Y.366, D:Y.366 Water bridges: D:K.76, D:K.76, D:R.404, D:R.404, D:R.404, D:R.404 Salt bridges: D:H.18, D:K.76, D:R.404 ADP.5: 19 residues within 4Å: Chain E: S.17, H.18, H.20, G.38, L.39, V.40, Q.42, P.71, P.72, G.73, T.74, G.75, K.76, T.77, A.78, Y.366, I.374, L.403, R.404 22 PLIP interactions: 22 interactions with chain E Hydrogen bonds: E:S.17, E:H.18, E:V.40, E:P.71, E:G.73, E:T.74, E:T.74, E:G.75, E:K.76, E:T.77, E:T.77, E:T.77, E:A.78, E:Y.366, E:Y.366 Water bridges: E:K.76, E:K.76, E:R.404, E:R.404 Salt bridges: E:H.18, E:K.76, E:R.404 ADP.6: 19 residues within 4Å: Chain F: S.17, H.18, H.20, G.38, L.39, V.40, P.71, P.72, G.73, T.74, G.75, K.76, T.77, A.78, Y.366, I.374, R.378, L.403, R.404 20 PLIP interactions: 20 interactions with chain F Hydrogen bonds: F:H.18, F:V.40, F:G.73, F:T.74, F:T.74, F:G.75, F:K.76, F:T.77, F:A.78, F:Y.366, F:Y.366 Water bridges: F:K.76, F:K.76, F:R.404, F:R.404, F:R.404, F:R.404 Salt bridges: F:H.18, F:K.76, F:R.404

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Matias, P.M. et al., Crystal structure of the human AAA+ protein RuvBL1. J. Biol. Chem. (2006)

Release Date

2006-10-23

Peptides

RUVB-LIKE 1: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

C
B

D
C

E
B

F
C

RUVB-LIKE 1

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