SMTL ID : 6fo1.1

Human R2TP subcomplex containing 1 RUVBL1-RUVBL2 hexamer bound to 1 RBD domain from RPAP3.

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-1-mer

Ligands

6 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)(Covalent)

ADP.1: 17 residues within 4Å: Chain A: S.17, H.18, H.20, G.38, L.39, V.40, P.72, G.73, T.74, G.75, K.76, T.77, A.78, Y.366, I.374, L.403, R.404 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:S.17, A:H.18, A:V.40, A:V.40, A:G.73, A:T.74, A:G.75, A:K.76, A:T.77, A:A.78, A:Y.366 Salt bridges: A:H.18, A:K.76, A:R.404, A:R.404 ADP.2: 17 residues within 4Å: Chain B: S.17, H.18, H.20, G.38, L.39, V.40, P.72, G.73, T.74, G.75, K.76, T.77, A.78, Y.366, I.374, L.403, R.404 14 PLIP interactions: 14 interactions with chain B Hydrogen bonds: B:S.17, B:H.18, B:V.40, B:G.73, B:T.74, B:G.75, B:K.76, B:T.77, B:A.78, B:Y.366, B:Y.366 Salt bridges: B:H.18, B:R.404, B:R.404 ADP.3: 17 residues within 4Å: Chain C: S.17, H.18, H.20, G.38, L.39, V.40, P.72, G.73, T.74, G.75, K.76, T.77, A.78, Y.366, I.374, L.403, R.404 15 PLIP interactions: 15 interactions with chain C Hydrogen bonds: C:S.17, C:S.17, C:H.18, C:V.40, C:G.73, C:T.74, C:G.75, C:K.76, C:T.77, C:A.78, C:Y.366, C:Y.366 Salt bridges: C:K.76, C:R.404, C:R.404 ADP.4: 19 residues within 4Å: Chain D: H.25, H.27, I.28, G.45, M.46, V.47, Q.49, P.79, G.80, T.81, G.82, K.83, T.84, A.85, Y.362, I.370, L.399, R.400, I.403 13 PLIP interactions: 13 interactions with chain D Hydrogen bonds: D:H.25, D:V.47, D:G.80, D:T.81, D:G.82, D:K.83, D:T.84, D:T.84, D:A.85, D:Y.362 Salt bridges: D:H.25, D:K.83, D:R.400 ADP.5: 18 residues within 4Å: Chain E: A.24, H.25, H.27, I.28, G.45, M.46, V.47, P.79, G.80, T.81, G.82, K.83, T.84, Y.362, I.370, L.399, R.400, I.403 16 PLIP interactions: 16 interactions with chain E Hydrogen bonds: E:A.24, E:H.25, E:V.47, E:G.80, E:G.80, E:T.81, E:G.82, E:K.83, E:T.84, E:T.84, E:A.85, E:Y.362 Salt bridges: E:H.25, E:K.83, E:R.400, E:R.400 ADP.6: 19 residues within 4Å: Chain F: A.24, H.25, H.27, I.28, G.45, M.46, V.47, P.79, G.80, T.81, G.82, K.83, T.84, A.85, Y.362, I.370, L.399, R.400, I.403 16 PLIP interactions: 16 interactions with chain F Hydrogen bonds: F:A.24, F:H.25, F:V.47, F:G.80, F:G.80, F:T.81, F:G.82, F:K.83, F:T.84, F:T.84, F:A.85, F:Y.362 Salt bridges: F:H.25, F:K.83, F:R.400, F:R.400

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Martino, F. et al., RPAP3 provides a flexible scaffold for coupling HSP90 to the human R2TP co-chaperone complex. Nat Commun (2018)

Release Date

2018-04-04

Peptides

RuvB-like 1: ABC
RuvB-like 2: DEF
RNA polymerase II-associated protein 3: G

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

RuvB-like 1

RuvB-like 2

RNA polymerase II-associated protein 3

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