SMTL ID : 7p6x.1

Cryo-Em structure of the hexameric RUVBL1-RUVBL2 in complex with ZNHIT2

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-mer

Ligands

3 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 22 residues within 4Å: Chain A: S.17, H.18, H.20, G.38, L.39, V.40, G.41, Q.42, P.72, G.73, T.74, G.75, K.76, T.77, A.78, Y.366, I.374, I.377, R.378, L.403, R.404, V.407 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:S.17, A:S.17, A:H.18, A:H.20, A:V.40, A:V.40, A:G.73, A:T.74, A:G.75, A:K.76, A:T.77, A:T.77, A:A.78, A:Y.366 Salt bridges: A:H.18, A:K.76, A:R.404, A:R.404 ADP.2: 23 residues within 4Å: Chain B: S.17, H.18, H.20, V.21, G.38, L.39, V.40, Q.42, R.46, G.73, T.74, G.75, K.76, T.77, A.78, D.302, Y.366, I.374, I.377, R.378, L.403, R.404, V.407 15 PLIP interactions: 15 interactions with chain B Hydrogen bonds: B:S.17, B:H.20, B:V.40, B:G.73, B:G.75, B:K.76, B:T.77, B:A.78, B:D.302, B:Y.366, B:Y.366 Salt bridges: B:H.18, B:K.76, B:R.404, B:R.404 ADP.3: 21 residues within 4Å: Chain C: S.17, H.18, H.20, V.21, G.38, L.39, V.40, Q.42, P.72, G.73, T.74, G.75, K.76, T.77, A.78, Y.366, I.374, R.378, L.403, R.404, V.407 15 PLIP interactions: 15 interactions with chain C Hydrogen bonds: C:S.17, C:H.20, C:V.40, C:G.73, C:T.74, C:G.75, C:K.76, C:T.77, C:A.78, C:Y.366, C:Y.366 Salt bridges: C:H.18, C:K.76, C:R.404, C:R.404

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Serna, M. et al., CryoEM of RUVBL1-RUVBL2-ZNHIT2, a complex that interacts with pre-mRNA-processing-splicing factor 8. Nucleic Acids Res. (2022)

Release Date

2021-12-15

Peptides

RuvB-like 1: ABC
RuvB-like 2: DEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

RuvB-like 1

RuvB-like 2

Related Entries With Identical Sequence