SMTL ID : 2cbi.1 (1 other biounit)

Structure of the Clostridium perfringens NagJ family 84 glycoside hydrolase, a homologue of human O-GlcNAcase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: E.252, D.256 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.252, A:D.256

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 4 residues within 4Å: Chain A: Q.131, N.178, H.412, M.436 Ligand excluded by PLIP

1 x GBL: GAMMA-BUTYROLACTONE(Non-covalent)

GBL.3: 8 residues within 4Å: Chain A: D.267, V.301, Y.305, T.336, V.340, W.364, N.366 Ligands: GOL.4 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.301, A:Y.305, A:T.336, A:W.364 Hydrogen bonds: A:N.366

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 10 residues within 4Å: Chain A: G.157, F.158, V.340, N.366, V.369, D.371, Y.372, N.399, W.460 Ligands: GBL.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.366, A:N.399

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rao, F.V. et al., Structural insights into the mechanism and inhibition of eukaryotic O-GlcNAc hydrolysis. EMBO J. (2006)

Release Date

2006-02-13

Peptides

HYALURONIDASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

HYALURONIDASE

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