SMTL ID : 2v5c.1 (1 other biounit)

Family 84 glycoside hydrolase from Clostridium perfringens, 2.1 Angstrom structure

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: E.527, A.567, L.568, S.570, A.572, V.573 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:A.567, A:S.570, A:A.572, H2O.24, H2O.24 CA.2: 3 residues within 4Å: Chain A: E.43, E.78, D.81 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.43, A:E.78, A:D.81, A:D.81, H2O.4

3 x CAC: CACODYLATE ION(Non-covalent)

CAC.3: 2 residues within 4Å: Chain A: H.383, Y.426 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.383 Water bridges: A:Y.426 CAC.4: 5 residues within 4Å: Chain A: G.157, V.341, N.366, D.371, N.399 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.371, A:N.399 CAC.5: 6 residues within 4Å: Chain A: Q.545, Y.553, K.557, L.587, F.589, D.590 2 PLIP interactions: 2 interactions with chain A Water bridges: A:E.554, A:K.557

1 x NA: SODIUM ION(Non-functional Binders)

NA.6: 5 residues within 4Å: Chain A: M.541, Y.553, A.586, L.587, F.589 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.553, A:Y.553

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ficko-Blean, E. et al., Portrait of an Enzyme: A Complete Structural Analysis of a Multi-Modular Beta-N-Acetylglucosaminidase from Clostridium Perfringens. J.Biol.Chem. (2009)

Release Date

2009-01-27

Peptides

O-GLCNACASE NAGJ: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

O-GLCNACASE NAGJ

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