SMTL ID : 2vur.1 (1 other biounit)

Chemical dissection of the link between Streptozotocin, O-GlcNAc and pancreatic cell death

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x YX1: 2-deoxy-2-{[(2-hydroxy-1-methylhydrazino)carbonyl]amino}-beta-D-glucopyranose(Non-covalent)

YX1.1: 14 residues within 4Å: Chain A: G.157, F.158, Y.265, D.267, V.301, Y.305, T.336, V.340, W.364, N.366, V.369, D.371, Y.372, N.399 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:G.157, A:G.157, A:D.267, A:Y.305, A:N.366, A:N.399 Water bridges: A:K.188, A:D.267, A:D.267

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: R.317, A.318 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.318 Salt bridges: A:R.317

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pathak, S. et al., Chemical Dissection of the Link between Streptozotocin, O-Glcnac, and Pancreatic Cell Death. Chem.Biol. (2008)

Release Date

2009-02-10

Peptides

O-GLCNACASE NAGJ: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

O-GLCNACASE NAGJ

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