SMTL ID : 2d1j.1

Factor Xa in complex with the inhibitor 2-[[4-[(5-chloroindol-2-yl)sulfonyl]piperazin-1-yl] carbonyl]thieno[3,2-b]pyridine n-oxide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-1-1-mer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: D.56, N.58, Q.61, E.62, E.66 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.56, A:N.58, A:Q.61, A:E.66, H2O.2, H2O.2 CA.2: 4 residues within 4Å: Chain A: Y.173, D.174, R.211, K.214 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:Y.173, A:R.211, A:K.214, H2O.3

1 x D01: 2-({4-[(5-CHLORO-1H-INDOL-2-YL)SULFONYL]PIPERAZIN-1-YL}CARBONYL)THIENO[3,2-B]PYRIDINE 4-OXIDE(Non-covalent)

D01.3: 19 residues within 4Å: Chain A: E.83, T.84, Y.85, F.162, D.179, A.180, C.181, Q.182, S.185, V.203, S.204, W.205, G.206, E.207, G.208, C.209, G.216, I.217, Y.218 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:F.162, A:A.180, A:V.203 Hydrogen bonds: A:Q.182, A:G.206, A:G.208, A:G.208 Water bridges: A:Q.182 pi-Stacking: A:Y.85, A:F.162, A:F.162, A:W.205

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Komoriya, S. et al., Design, synthesis, and biological activity of non-basic compounds as factor Xa inhibitors: SAR study of S1 and aryl binding sites. Bioorg.Med.Chem. (2005)

Release Date

2006-08-24

Peptides

Coagulation factor X, heavy chain: A
Coagulation factor X, light chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Coagulation factor X, heavy chain

Coagulation factor X, light chain

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