- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.15 Å
- Oligo State
- homo-hexamer
- Ligands
- 24 x BR: BROMIDE ION(Non-covalent)
- 6 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)
PLP.5: 15 residues within 4Å:- Chain A: G.125, S.126, S.127, Q.163, C.165, T.208, T.212, D.243, A.245, S.246, S.273, H.275, K.276
- Chain B: F.317, S.318
12 PLIP interactions:11 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:Q.163, A:Q.163, A:T.208, A:A.245, A:K.276
- Hydrogen bonds: A:S.126, A:S.127, A:S.246, A:S.273, B:S.318
- Salt bridges: A:H.275, A:K.276
PLP.12: 14 residues within 4Å:- Chain A: F.317, S.318
- Chain B: G.125, S.126, S.127, Q.163, C.165, T.212, D.243, A.245, S.246, S.273, H.275, K.276
14 PLIP interactions:11 interactions with chain B, 3 interactions with chain A- Hydrophobic interactions: B:Q.163, B:Q.163, B:A.245, B:K.276
- Hydrogen bonds: B:S.126, B:S.127, B:S.246, B:S.273, B:S.273, A:S.318
- Salt bridges: B:H.275, B:K.276
- Water bridges: A:F.317, A:F.317
PLP.18: 14 residues within 4Å:- Chain C: G.125, S.126, S.127, Q.163, C.165, T.212, D.243, A.245, S.246, S.273, H.275, K.276
- Chain D: F.317, S.318
12 PLIP interactions:11 interactions with chain C, 1 interactions with chain D- Hydrophobic interactions: C:Q.163, C:Q.163, C:A.245, C:K.276
- Hydrogen bonds: C:S.126, C:S.127, C:S.246, C:S.273, C:K.276, D:S.318
- Salt bridges: C:H.275, C:K.276
PLP.24: 14 residues within 4Å:- Chain C: F.317, S.318
- Chain D: G.125, S.126, S.127, Q.163, C.165, T.212, D.243, A.245, S.246, S.273, H.275, K.276
11 PLIP interactions:9 interactions with chain D, 2 interactions with chain C- Hydrophobic interactions: D:Q.163, D:K.276
- Hydrogen bonds: D:S.126, D:S.127, D:S.246, D:S.273, D:K.276, C:F.317, C:S.318
- Salt bridges: D:H.275, D:K.276
PLP.29: 15 residues within 4Å:- Chain E: G.125, S.126, S.127, Q.163, C.165, T.208, T.212, D.243, A.245, S.246, S.273, H.275, K.276
- Chain F: F.317, S.318
13 PLIP interactions:11 interactions with chain E, 2 interactions with chain F- Hydrophobic interactions: E:Q.163, E:Q.163, E:T.208, E:K.276
- Hydrogen bonds: E:S.126, E:S.127, E:S.246, E:S.273, E:K.276, F:S.318, F:S.318
- Salt bridges: E:H.275, E:K.276
PLP.35: 14 residues within 4Å:- Chain E: F.317, S.318
- Chain F: G.125, S.126, S.127, Q.163, C.165, T.208, T.212, D.243, A.245, S.273, H.275, K.276
12 PLIP interactions:11 interactions with chain F, 1 interactions with chain E- Hydrophobic interactions: F:Q.163, F:Q.163, F:T.208, F:K.276
- Hydrogen bonds: F:S.126, F:S.127, F:S.246, F:S.273, F:S.273, E:S.318
- Salt bridges: F:H.275, F:K.276
- 6 x ACY: ACETIC ACID(Non-functional Binders)
ACY.6: 8 residues within 4Å:- Chain A: N.83, D.86, F.317, S.318
- Chain B: T.62, F.63, C.64, K.276
4 PLIP interactions:2 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:F.63, A:N.83
- Salt bridges: B:K.276
- Hydrophobic interactions: A:F.317
ACY.13: 7 residues within 4Å:- Chain A: T.62, F.63, C.64, K.276
- Chain B: N.83, D.86, S.318
5 PLIP interactions:3 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:N.83, B:D.86, B:S.318, A:F.63
- Salt bridges: A:K.276
ACY.19: 8 residues within 4Å:- Chain C: T.62, F.63, C.64, K.276
- Chain D: N.83, D.86, F.317, S.318
6 PLIP interactions:3 interactions with chain C, 3 interactions with chain D- Hydrogen bonds: C:T.62, C:F.63, D:N.83, D:D.86
- Salt bridges: C:K.276
- Hydrophobic interactions: D:F.317
ACY.20: 7 residues within 4Å:- Chain C: N.83, D.86, F.317, S.318
- Chain D: T.62, F.63, C.64
5 PLIP interactions:2 interactions with chain C, 3 interactions with chain D- Hydrophobic interactions: C:F.317
- Hydrogen bonds: C:N.83, D:T.62, D:F.63
- Salt bridges: D:K.276
ACY.30: 7 residues within 4Å:- Chain E: T.62, F.63, C.64, K.276
- Chain F: D.86, F.317, S.318
4 PLIP interactions:2 interactions with chain E, 2 interactions with chain F- Hydrogen bonds: E:F.63, F:D.86
- Salt bridges: E:K.276
- Hydrophobic interactions: F:F.317
ACY.36: 6 residues within 4Å:- Chain E: N.83, D.86, S.318
- Chain F: T.62, F.63, C.64
3 PLIP interactions:1 interactions with chain E, 2 interactions with chain F- Hydrogen bonds: E:N.83, F:F.63
- Salt bridges: F:K.276
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gut, H. et al., Escherichia coli acid resistance: pH-sensing, activation by chloride and autoinhibition in GadB. Embo J. (2006)
- Release Date
- 2006-06-20
- Peptides
- Glutamate decarboxylase beta: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.15 Å
- Oligo State
- homo-hexamer
- Ligands
- 24 x BR: BROMIDE ION(Non-covalent)
- 6 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)
- 6 x ACY: ACETIC ACID(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gut, H. et al., Escherichia coli acid resistance: pH-sensing, activation by chloride and autoinhibition in GadB. Embo J. (2006)
- Release Date
- 2006-06-20
- Peptides
- Glutamate decarboxylase beta: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F