SMTL ID : 2e48.3 (2 other biounits)

Crystal Structure of Human D-Amino Acid Oxidase: Substrate-Free Holoenzyme

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

homo-tetramer

Ligands

4 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 35 residues within 4Å: Chain A: I.6, G.7, A.8, G.9, V.10, I.11, A.36, D.37, R.38, T.43, T.44, T.45, A.48, A.49, G.50, L.51, R.162, K.163, V.164, T.182, G.183, W.185, L.189, I.202, Y.228, G.281, R.283, P.284, H.311, G.312, G.313, Y.314, G.315, L.316, T.317 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:I.202 Hydrogen bonds: A:A.8, A:G.9, A:D.37, A:D.37, A:R.38, A:T.44, A:T.44, A:T.44, A:T.45, A:A.49, A:G.50, A:L.51, A:L.51, A:V.164, A:V.164, A:G.312, A:G.315, A:L.316, A:T.317, A:T.317 pi-Cation interactions: A:R.283 FAD.2: 36 residues within 4Å: Chain B: I.6, G.7, A.8, G.9, V.10, I.11, A.36, D.37, R.38, T.43, T.44, T.45, V.47, A.48, A.49, G.50, L.51, R.162, K.163, V.164, T.182, G.183, W.185, L.189, I.202, Y.228, G.281, R.283, P.284, H.311, G.312, G.313, Y.314, G.315, L.316, T.317 23 PLIP interactions: 23 interactions with chain B Hydrophobic interactions: B:V.47, B:I.202, B:R.283 Hydrogen bonds: B:A.8, B:G.9, B:V.10, B:D.37, B:R.38, B:T.44, B:T.44, B:T.44, B:T.45, B:T.45, B:A.49, B:G.50, B:L.51, B:L.51, B:V.164, B:V.164, B:G.312, B:G.315, B:L.316, B:T.317 FAD.3: 36 residues within 4Å: Chain C: I.6, G.7, A.8, G.9, V.10, I.11, A.36, D.37, R.38, T.43, T.44, T.45, V.47, A.48, A.49, G.50, L.51, R.162, K.163, V.164, T.182, G.183, W.185, L.189, I.202, Y.228, G.281, R.283, P.284, H.311, G.312, G.313, Y.314, G.315, L.316, T.317 25 PLIP interactions: 25 interactions with chain C Hydrophobic interactions: C:I.202, C:R.283 Hydrogen bonds: C:A.8, C:G.9, C:V.10, C:D.37, C:R.38, C:R.38, C:T.43, C:T.44, C:T.45, C:T.45, C:A.49, C:G.50, C:L.51, C:L.51, C:V.164, C:V.164, C:G.312, C:Y.314, C:G.315, C:L.316, C:T.317 Water bridges: C:I.11, C:I.11 FAD.4: 35 residues within 4Å: Chain D: I.6, G.7, A.8, G.9, V.10, I.11, A.36, D.37, R.38, T.43, T.44, T.45, V.47, A.48, A.49, G.50, L.51, R.162, K.163, V.164, T.182, G.183, W.185, L.189, I.202, Y.228, G.281, R.283, P.284, G.312, G.313, Y.314, G.315, L.316, T.317 27 PLIP interactions: 27 interactions with chain D Hydrophobic interactions: D:I.202, D:R.283 Hydrogen bonds: D:A.8, D:G.9, D:V.10, D:D.37, D:D.37, D:D.37, D:R.38, D:T.44, D:T.45, D:A.49, D:G.50, D:L.51, D:L.51, D:V.164, D:V.164, D:G.312, D:Y.314, D:G.315, D:L.316, D:T.317, D:T.317 Water bridges: D:G.12, D:G.183, D:R.283 pi-Cation interactions: D:R.283

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kawazoe, T. et al., Structural basis of d-DOPA oxidation by d-amino acid oxidase: Alternative pathway for dopamine biosynthesis. Biochem.Biophys.Res.Commun. (2007)

Release Date

2007-03-06

Peptides

D-amino-acid oxidase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

D-amino-acid oxidase

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