SMTL ID : 2e49.2 (1 other biounit)

Crystal Structure of Human D-Amino Acid Oxidase in Complex with Imino-Serine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

homo-dimer

Ligands

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 35 residues within 4Å: Chain A: I.6, G.7, G.9, V.10, I.11, A.36, D.37, R.38, T.43, T.44, T.45, V.47, A.48, A.49, G.50, L.51, R.162, K.163, V.164, T.182, G.183, W.185, L.189, G.200, I.202, G.281, R.283, P.284, G.312, G.313, Y.314, G.315, L.316, T.317 Ligands: MH6.2 24 PLIP interactions: 24 interactions with chain A Hydrophobic interactions: A:V.47, A:I.202, A:R.283 Hydrogen bonds: A:A.8, A:G.9, A:V.10, A:D.37, A:D.37, A:R.38, A:R.38, A:T.44, A:T.45, A:A.49, A:G.50, A:L.51, A:L.51, A:V.164, A:V.164, A:G.312, A:G.315, A:L.316, A:T.317, A:T.317 Water bridges: A:D.37 FAD.3: 38 residues within 4Å: Chain B: I.6, G.7, A.8, G.9, V.10, I.11, A.36, D.37, R.38, T.43, T.44, T.45, V.47, A.48, A.49, G.50, L.51, R.162, K.163, V.164, T.182, G.183, W.185, L.189, G.200, I.202, Y.228, G.281, F.282, R.283, P.284, G.312, G.313, Y.314, G.315, L.316, T.317 Ligands: MH6.4 25 PLIP interactions: 25 interactions with chain B Hydrophobic interactions: B:T.44, B:V.47, B:I.202, B:R.283 Hydrogen bonds: B:A.8, B:G.9, B:I.11, B:D.37, B:D.37, B:R.38, B:R.38, B:T.44, B:T.45, B:T.45, B:A.49, B:G.50, B:L.51, B:L.51, B:V.164, B:V.164, B:G.312, B:G.315, B:L.316, B:T.317 pi-Cation interactions: B:R.283

2 x MH6: 3-HYDROXY-2-IMINOPROPANOIC ACID(Non-covalent)

MH6.2: 7 residues within 4Å: Chain A: L.215, Y.224, Y.228, I.230, R.283, G.313 Ligands: FAD.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.313, A:G.313 Salt bridges: A:R.283 MH6.4: 7 residues within 4Å: Chain B: L.51, L.215, Y.224, Y.228, R.283, G.313 Ligands: FAD.3 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Y.224, B:Y.224, B:G.313 Salt bridges: B:R.283

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kawazoe, T. et al., Structural basis of d-DOPA oxidation by d-amino acid oxidase: Alternative pathway for dopamine biosynthesis. Biochem.Biophys.Res.Commun. (2007)

Release Date

2007-03-06

Peptides

D-amino-acid oxidase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

D-amino-acid oxidase

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