SMTL ID : 3zno.1

IN VITRO AND IN VIVO INHIBITION OF HUMAN D-AMINO ACID OXIDASE: REGULATION OF D-SERINE CONCENTRATION IN THE BRAIN

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 36 residues within 4Å: Chain A: I.6, G.7, A.8, G.9, V.10, I.11, A.36, D.37, R.38, T.43, T.44, T.45, V.47, A.48, A.49, G.50, L.51, R.162, K.163, V.164, C.181, T.182, G.183, W.185, I.202, Y.228, G.281, R.283, H.311, G.312, G.313, Y.314, G.315, L.316, T.317 Ligands: SE5.2 29 PLIP interactions: 29 interactions with chain A Hydrophobic interactions: A:V.47, A:I.202, A:R.283 Hydrogen bonds: A:A.8, A:G.9, A:I.11, A:D.37, A:D.37, A:R.38, A:T.43, A:T.44, A:T.44, A:T.45, A:T.45, A:A.49, A:G.50, A:L.51, A:L.51, A:V.164, A:V.164, A:G.312, A:Y.314, A:G.315, A:L.316, A:T.317, A:T.317 Water bridges: A:G.12, A:K.163, A:G.183 FAD.4: 37 residues within 4Å: Chain B: I.6, G.7, A.8, G.9, V.10, I.11, Y.35, A.36, D.37, R.38, T.43, T.44, T.45, V.47, A.48, A.49, G.50, L.51, R.162, K.163, V.164, C.181, T.182, G.183, W.185, G.200, I.202, Y.228, G.281, R.283, G.312, G.313, Y.314, G.315, L.316, T.317 Ligands: SE5.5 28 PLIP interactions: 28 interactions with chain B Hydrophobic interactions: B:V.47, B:I.202, B:R.283 Hydrogen bonds: B:A.8, B:G.9, B:V.10, B:I.11, B:D.37, B:R.38, B:R.38, B:T.43, B:T.44, B:T.45, B:T.45, B:A.49, B:G.50, B:L.51, B:L.51, B:V.164, B:V.164, B:G.312, B:Y.314, B:G.315, B:L.316, B:T.317, B:T.317 Water bridges: B:G.12, B:G.183

2 x SE5: 4-(4-chlorophenethyl)-1H-pyrrole-2-carboxylic acid(Non-covalent)

SE5.2: 10 residues within 4Å: Chain A: Q.53, L.56, L.215, I.223, Y.224, Y.228, I.230, R.283, G.313 Ligands: FAD.1 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:Q.53, A:L.215, A:L.215, A:Y.224, A:Y.224, A:Y.228, A:I.230 Hydrogen bonds: A:Y.228, A:Y.228, A:G.313 Salt bridges: A:R.283 SE5.5: 11 residues within 4Å: Chain B: L.51, Q.53, L.215, H.217, I.223, Y.224, Y.228, I.230, R.283, G.313 Ligands: FAD.4 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:L.51, B:Q.53, B:L.215, B:Y.224, B:Y.228, B:I.230 Hydrogen bonds: B:Y.228, B:G.313 Salt bridges: B:R.283

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 7 residues within 4Å: Chain A: M.210, K.211, H.212, I.214, E.267 Chain B: H.80, L.91 5 PLIP interactions: 2 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:V.79, A:K.211, A:H.212, A:H.212 Water bridges: B:L.91

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hopkins, S.C. et al., Structural, Kinetic, and Pharmacodynamic Mechanisms of D-Amino Acid Oxidase Inhibition by Small Molecules. J.Med.Chem. (2013)

Release Date

2013-05-15

Peptides

D-AMINO-ACID OXIDASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

D-AMINO-ACID OXIDASE

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