SMTL ID : 2e52.1 (1 other biounit)

Crystal structural analysis of HindIII restriction endonuclease in complex with cognate DNA at 2.0 angstrom resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 9 residues within 4Å: Chain A: F.146, F.147, Y.149, P.150, T.151, N.211, M.213 Chain B: R.297, Y.299 6 PLIP interactions: 2 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:R.297, B:R.297, A:Y.149, A:Y.149, A:N.211, A:N.211 GOL.3: 7 residues within 4Å: Chain A: Q.88, G.90 Chain B: K.153 Chain C: G.1, C.2, C.3 Chain D: G.11 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:K.153, A:G.90

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 5 residues within 4Å: Chain B: L.161, D.162, S.200, T.203, A.208 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:K.158

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Watanabe, N. et al., Structures of restriction endonuclease HindIII in complex with its cognate DNA and divalent cations. Acta Crystallogr.,Sect.D (2009)

Release Date

2007-12-18

Peptides

Type II restriction enzyme HindIII: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Type II restriction enzyme HindIII

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