- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x DG- DC- DC- DA: DNA (5'-D(*GP*CP*CP*A)-3')(Non-covalent)
- 2 x DA- DG- DC- DT- DT- DG- DG- DC: DNA (5'-D(P*AP*GP*CP*TP*TP*GP*GP*C)-3')(Non-covalent)
DA-DG-DC-DT-DT-DG-DG-DC.2: 42 residues within 4Å:- Chain A: L.50, S.57, E.61, S.65, D.94, D.109, A.110, K.111, S.112, F.113, R.114, S.116, R.117, T.118, A.119, N.121, D.124, K.126
- Chain B: F.21, K.22, S.57, S.58, T.59, K.62, E.87, R.89, N.121, K.123, N.277, K.281
- Ligands: DG-DC-DC-DA.1, DG-DC-DC-DA.3, DG-DC-DC-DA.3, DG-DC-DC-DA.3, DG-DC-DC-DA.3, DA-DG-DC-DT-DT-DG-DG-DC.4, DA-DG-DC-DT-DT-DG-DG-DC.4, DA-DG-DC-DT-DT-DG-DG-DC.4, DA-DG-DC-DT-DT-DG-DG-DC.4, DA-DG-DC-DT-DT-DG-DG-DC.4, MN.6, MN.7
Protein-ligand interaction information (PLIP) not availableDA-DG-DC-DT-DT-DG-DG-DC.4: 42 residues within 4Å:- Chain A: F.21, K.22, S.57, S.58, T.59, K.62, E.87, R.89, N.121, K.123, N.277, K.281
- Chain B: L.50, S.57, E.61, S.65, D.94, D.109, A.110, K.111, S.112, F.113, R.114, S.116, R.117, T.118, A.119, N.121, D.124, K.126
- Ligands: DG-DC-DC-DA.1, DG-DC-DC-DA.1, DG-DC-DC-DA.1, DG-DC-DC-DA.1, DA-DG-DC-DT-DT-DG-DG-DC.2, DA-DG-DC-DT-DT-DG-DG-DC.2, DA-DG-DC-DT-DT-DG-DG-DC.2, DA-DG-DC-DT-DT-DG-DG-DC.2, DA-DG-DC-DT-DT-DG-DG-DC.2, DG-DC-DC-DA.3, MN.9, MN.10
Protein-ligand interaction information (PLIP) not available- 2 x GOL: GLYCEROL(Non-functional Binders)
GOL.5: 8 residues within 4Å:- Chain A: F.146, F.147, Y.149, P.150, N.211, M.213
- Chain B: R.297, Y.299
6 PLIP interactions:4 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:Y.149, A:Y.149, A:N.211, A:N.211, B:R.297, B:R.297
GOL.8: 8 residues within 4Å:- Chain A: R.297, Y.299
- Chain B: F.146, F.147, Y.149, P.150, N.211, M.213
6 PLIP interactions:4 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:F.147, B:Y.149, B:N.211, B:N.211, A:R.297, A:R.297
- 4 x MN: MANGANESE (II) ION(Non-covalent)
MN.6: 5 residues within 4Å:- Chain A: D.94, D.109, A.110
- Ligands: DA-DG-DC-DT-DT-DG-DG-DC.2, MN.7
4 PLIP interactions:3 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.94, A:D.109, A:A.110, H2O.3
MN.7: 5 residues within 4Å:- Chain A: Q.88, D.94
- Ligands: DG-DC-DC-DA.1, DA-DG-DC-DT-DT-DG-DG-DC.2, MN.6
3 PLIP interactions:1 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.94, H2O.3, H2O.3
MN.9: 4 residues within 4Å:- Chain B: D.94, D.109, A.110
- Ligands: DA-DG-DC-DT-DT-DG-DG-DC.4
4 PLIP interactions:3 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.94, B:D.109, B:A.110, H2O.7
MN.10: 4 residues within 4Å:- Chain B: Q.88, D.94
- Ligands: DG-DC-DC-DA.3, DA-DG-DC-DT-DT-DG-DG-DC.4
3 PLIP interactions:1 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:D.94, H2O.7, H2O.7
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kawamura, T. et al., Analysis of the HindIII-catalyzed reaction by time-resolved crystallography. Acta Crystallogr.,Sect.D (2015)
- Release Date
- 2015-04-08
- Peptides
- Type-2 restriction enzyme HindIII: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x DG- DC- DC- DA: DNA (5'-D(*GP*CP*CP*A)-3')(Non-covalent)
- 2 x DA- DG- DC- DT- DT- DG- DG- DC: DNA (5'-D(P*AP*GP*CP*TP*TP*GP*GP*C)-3')(Non-covalent)
- 2 x GOL: GLYCEROL(Non-functional Binders)
- 4 x MN: MANGANESE (II) ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kawamura, T. et al., Analysis of the HindIII-catalyzed reaction by time-resolved crystallography. Acta Crystallogr.,Sect.D (2015)
- Release Date
- 2015-04-08
- Peptides
- Type-2 restriction enzyme HindIII: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
D