- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x DA- DG- DC- DT- DT- DG- DG- DC: DNA (5'-D(P*AP*GP*CP*TP*TP*GP*GP*C)-3')(Non-covalent)
- 2 x DG- DC- DC- DA: DNA (5'-D(*GP*CP*CP*A)-3')(Non-covalent)
DG-DC-DC-DA.3: 21 residues within 4Å:- Chain A: A.119, N.121, Q.122, P.150, T.151, T.152, K.153, S.154, Q.155
- Chain B: R.89, G.90, N.91, K.126, W.133
- Ligands: DA-DG-DC-DT-DT-DG-DG-DC.1, DA-DG-DC-DT-DT-DG-DG-DC.1, DA-DG-DC-DT-DT-DG-DG-DC.1, DA-DG-DC-DT-DT-DG-DG-DC.1, DA-DG-DC-DT-DT-DG-DG-DC.1, DA-DG-DC-DT-DT-DG-DG-DC.2, MN.10
Protein-ligand interaction information (PLIP) not availableDG-DC-DC-DA.4: 21 residues within 4Å:- Chain A: R.89, G.90, N.91, K.126, W.133
- Chain B: A.119, N.121, Q.122, P.150, T.151, T.152, K.153, S.154, Q.155
- Ligands: DA-DG-DC-DT-DT-DG-DG-DC.1, DA-DG-DC-DT-DT-DG-DG-DC.2, DA-DG-DC-DT-DT-DG-DG-DC.2, DA-DG-DC-DT-DT-DG-DG-DC.2, DA-DG-DC-DT-DT-DG-DG-DC.2, DA-DG-DC-DT-DT-DG-DG-DC.2, MN.8
Protein-ligand interaction information (PLIP) not available- 2 x GOL: GLYCEROL(Non-functional Binders)
GOL.5: 10 residues within 4Å:- Chain A: F.146, F.147, Q.148, Y.149, P.150, T.151, N.211, M.213
- Chain B: R.297, Y.299
6 PLIP interactions:4 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:F.147, A:Y.149, A:N.211, A:N.211, B:R.297, B:R.297
GOL.6: 7 residues within 4Å:- Chain A: R.297, Y.299
- Chain B: F.146, F.147, Y.149, N.211, M.213
6 PLIP interactions:2 interactions with chain A, 4 interactions with chain B- Hydrogen bonds: A:R.297, A:R.297, B:Y.149, B:Y.149, B:N.211, B:N.211
- 4 x MN: MANGANESE (II) ION(Non-covalent)
MN.7: 4 residues within 4Å:- Chain A: D.94, D.109, A.110
- Ligands: DA-DG-DC-DT-DT-DG-DG-DC.1
4 PLIP interactions:3 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.94, A:D.109, A:A.110, H2O.2
MN.8: 3 residues within 4Å:- Chain A: D.94
- Ligands: DA-DG-DC-DT-DT-DG-DG-DC.1, DG-DC-DC-DA.4
4 PLIP interactions:1 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:D.94, H2O.3, H2O.3, H2O.3
MN.9: 4 residues within 4Å:- Chain B: D.94, D.109, A.110
- Ligands: DA-DG-DC-DT-DT-DG-DG-DC.2
4 PLIP interactions:3 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.94, B:D.109, B:A.110, H2O.5
MN.10: 3 residues within 4Å:- Chain B: D.94
- Ligands: DA-DG-DC-DT-DT-DG-DG-DC.2, DG-DC-DC-DA.3
4 PLIP interactions:1 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:D.94, H2O.5, H2O.5, H2O.6
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kawamura, T. et al., Analysis of the HindIII-catalyzed reaction by time-resolved crystallography. Acta Crystallogr.,Sect.D (2015)
- Release Date
- 2015-04-08
- Peptides
- Type-2 restriction enzyme HindIII: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x DA- DG- DC- DT- DT- DG- DG- DC: DNA (5'-D(P*AP*GP*CP*TP*TP*GP*GP*C)-3')(Non-covalent)
- 2 x DG- DC- DC- DA: DNA (5'-D(*GP*CP*CP*A)-3')(Non-covalent)
- 2 x GOL: GLYCEROL(Non-functional Binders)
- 4 x MN: MANGANESE (II) ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kawamura, T. et al., Analysis of the HindIII-catalyzed reaction by time-resolved crystallography. Acta Crystallogr.,Sect.D (2015)
- Release Date
- 2015-04-08
- Peptides
- Type-2 restriction enzyme HindIII: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B